Welcome to Benchling

Benchling is an intelligent research platform with tools for note-taking, molecular biology, and sample tracking.

Create an account

Email
Already have an account?
Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
pMSx64
  • Sequence Map
Editing is disabled because sequence edits have been locked.
tcatgtctgtataccgtcgacctctagctagagcttggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaactcacattaattgcgttgcgcagtacagacatatggcagctggagatcgatctcgaaccgcattagtaccagtatcgacaaaggacacactttaacaataggcgagtgttaaggtgtgttgtatgctcggccttcgtatttcacatttcggaccccacggattactcactcgattgagtgtaattaacgcaacgcgSalIHincIIBstZ17I20406080100120140160
tcactgcccgctttccagtcgggaaacctgtcgtgccagctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaaagtgacgggcgaaaggtcagccctttggacagcacggtcgacgtaattacttagccggttgcgcgcccctctccgccaaacgcataacccgcgagaaggcgaaggagcgagtgactgagcgacgcgagccagcaagccgacgccgctcgccatagtcgagtgagtttccgccattBsaXI180200220240260280300320340
tacggttatccacagaatcaggggataacgcaggaaagaacatgtgagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttccataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacaggatgccaataggtgtcttagtcccctattgcgtcctttcttgtacactcgttttccggtcgttttccggtccttggcatttttccggcgcaacgaccgcaaaaaggtatccgaggcggggggactgctcgtagtgtttttagctgcgagttcagtctccaccgctttgggctgtccPciIpUC ori360380400420440460480500520
actataaagataccaggcgtttccccctggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtggcgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagctgggctgatatttctatggtccgcaaagggggaccttcgagggagcacgcgagaggacaaggctgggacggcgaatggcctatggacaggcggaaagagggaagcccttcgcaccgcgaaagagtatcgagtgcgacatccatagagtcaagccacatccagcaagcgaggttcgacccgpUC ori540560580600620640660680700
tgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaactacacacgtgcttggggggcaagtcgggctggcgacgcggaataggccattgatagcagaactcaggttgggccattctgtgctgaatagcggtgaccgtcgtcggtgaccattgtcctaatcgtctcgctccatacatccgccacgatgtctcaagaacttcaccaccggattgaAlwNIApaLIpUC ori720740760780800820840860
acggctacactagaagaacagtatttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtttttttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgattgccgatgtgatcttcttgtcataaaccatagacgcgagacgacttcggtcaatggaagcctttttctcaaccatcgagaactaggccgtttgtttggtggcgaccatcgccaaaaaaacaaacgttcgtcgtctaatgcgcgtctttttttcctagagttcttctaggaaactapUC ori8809009209409609801,0001,0201,040
cttttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaaaagatgccccagactgcgagtcaccttgcttttgagtgcaattccctaaaaccagtactctaatagtttttcctagaagtggatctaggaaaatttaatttttacttcaaaatttagttagatttcatatatactcatttgaaccagactgtcaatggttacgaattagtcaBspHIAmpRpUC ori1,0601,0801,1001,1201,1401,1601,1801,2001,220
gaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctccagatttatcagcaataaaccagccagccggaactccgtggatagagtcgctagacagataaagcaagtaggtatcaacggactgaggggcagcacatctattgatgctatgccctcccgaatggtagaccggggtcacgacgttactatggcgctctgggtgcgagtggccgaggtctaaatagtcgttatttggtcggtcggccttAhdIBsaIAmpR1,2401,2601,2801,3001,3201,3401,3601,3801,400
gggccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagctagagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggtatggcttcattcagctccggcccggctcgcgtcttcaccaggacgttgaaataggcggaggtaggtcagataattaacaacggcccttcgatctcattcatcaagcggtcaattatcaaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagcagcaaaccataccgaagtaagtcgaggccBglIFspIAmpR1,4201,4401,4601,4801,5001,5201,5401,560
ttcccaacgatcaaggcgagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaagatgcttttctgtgaagggttgctagttccgctcaatgtactagggggtacaacacgttttttcgccaatcgaggaagccaggaggctagcaacagtcttcattcaaccggcgtcacaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacggtaggcattctacgaaaagacacPvuIAmpR1,5801,6001,6201,6401,6601,6801,7001,7201,740
actggtgagtactcaaccaagtcattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgctgttgagattgaccactcatgagttggttcagtaagactcttatcacatacgccgctggctcaacgagaacgggccgcagttatgccctattatggcgcggtgtatcgtcttgaaattttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcctagaatggcgacaactctaBcgIScaITatIXmnIAmpR1,7601,7801,8001,8201,8401,8601,8801,9001,920
ccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatattattgaagcatttaggtcaagctacattgggtgagcacgtgggttgactagaagtcgtagaaaatgaaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgttttttcccttattcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataataacttcgtaaatSspIApaLIAmpR1,9401,9601,9802,0002,0202,0402,0602,0802,100
tcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgccacctgacgtcgacggatcgggagatctccACGCGTGGTACCCTCGAGgcgatctgcatctcaattagtcagcaaccatagtcagtcccaataacagagtactcgcctatgtataaacttacataaatctttttatttgtttatccccaaggcgcgtgtaaaggggcttttcacggtggactgcagctgcctagccctctagaggTGCGCACCATGGGAGCTCcgctagacgtagagttaatcagtcgttggtatcagKpnIMluISalITliIXhoIZraIAatIIBglIIBspHIPspXISgrDIAcc65IHincIIPaeR7IAmpRSV40 early promoter2,1202,1402,1602,1802,2002,2202,2402,260
ccgcccctaactccgcccatcccgcccctaactccgcccagttccgcccattctccgccccatcgctgactaattttttttatttatgcagaggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggaggcctaggcttttgcaaaagagctcggcggggattgaggcgggtagggcggggattgaggcgggtcaaggcgggtaagaggcggggtagcgactgattaaaaaaaataaatacgtctccggctccggcggagccggagactcgataaggtcttcatcactcctccgaaaaaacctccggatccgaaaacgttttctcgagBglISacISfiIAvrIIBseRIEco53kISV40 early promoter2,2802,3002,3202,3402,3602,3802,4002,4202,440
tctggctaactagagaacccactgcttactggcttatcgaaattaatacgactcactatagggagacccaagctgTTCGAAGCGGAATTCACCATGACTAGTggtggttctggtatgcaagagaactacaagattctggtggtcgatgacgacatgcgcctgcgtgcgctgctggagaccgattgatctcttgggtgacgaatgaccgaatagctttaattatgctgagtgatatccctctgggttcgacAAGCTTCGCCTTAAGTGGTACTGATCAccaccaagaccatacgttctcttgatgttctaagaccaccagctactgctgtacgcggacgcacgcgacgaccBsaISpeIEcoRIMT2SG4GS6GM8QE10NY12KI14LV16VD18DD20MR22LR24AL26L2544-3560OmpR-OGRompR CDST7 prom2,4602,4802,5002,5202,5402,5602,5802,6002,620
aacgttatctcaccgaacaaggcttccaggttcgaagcgtcgctaatgcagaacagatggatcgcctgctgactcgtgaatctttccatcttatggtactggatttaatgttacctggtgaagatggcttgtcgatttgccgacgtcttcgtagtcagagcaacccgatgccgatttgcaatagagtggcttgttccgaaggtccaagcttcgcagcgattacgtcttgtctacctagcggacgactgagcacttagaaaggtagaataccatgacctaaattacaatggaccacttctaccgaacagctaaacggctgcagaagcatcagtctcgttgggctacggctaAloIZraIAatIIPflMISexAIE28RY30LT32EQ34GF36QV38RS40VA42NA44EQ46MD48RL50LT52RE54SF56HL58MV60LD62LM64LP66GE68DG70LS72IC74RR76LR78SQ80SN82PM84PI862544-3560OmpR-OGRompR CDS2,6402,6602,6802,7002,7202,7402,7602,7802,800
cattatggtgacggcgaaaggggaagaagtggaccgtatcgtaggcctggagattggcgctgacgactacattccaaaaccgtttaacccgcgtgaactgctggcccgtatccgtgcggtgctgcgtcgtcaggcgaacgaactgccaggcgcaccgtcacaggaagaggcggtagtaataccactgccgctttccccttcttcacctggcatagcatccggacctctaaccgcgactgctgatgtaaggttttggcaaattgggcgcacttgacgaccgggcataggcacgccacgacgcagcagtccgcttgcttgacggtccgcgtggcagtgtccttctccgccatBcgIIM88VT90AK92GE94EV96DR98IV100GL102EI104GA106DD108YI110PK112PF114NP116RE118LL120AR122IR124AV126LR128RQ130AN132EL134PG136AP138SQ140EE142AV1442544-3560OmpR-OGRompR CDS2,8202,8402,8602,8802,9002,9202,9402,960
attgctttcggtaagttcaaacttaacctcggtacgcgcgaaatgttccgcgaagacgagccgatgccgctcaccagcggtgagtttgcggtactgaaggcactggtcagccatccgcgtgagccgctctcccgcTATaagctgatgaaccttgcccgtggtcgtgaatattccgtaacgaaagccattcaagtttgaattggagccatgcgcgctttacaaggcgcttctgctcggctacggcgagtggtcgccactcaaacgccatgacttccgtgaccagtcggtaggcgcactcggcgagagggcgATAttcgactacttggaacgggcaccagcacttataaggcSspIIA146FG148KF150KL152NL154GT156RE158MF160RE162DE164PM166PL168TS170GE172FA174VL176KA178LV180SH182PR184EP186LS188RY190KL192MN194LA196RG198RE200YS2022544-3560OmpR-OGRompR CDS2,9803,0003,0203,0403,0603,0803,1003,1203,140
caatggaacgctccatcgacgtgcagatttcgcgtctgcgccgcatggtggaagaagatccagcgcatccgcgttacattcagaccgtctggggtctgggctacgtctttgtaccggacggctctaaagCTAGTggtggttctggtgcccccccgaccgatgtcagcctgggggagttaccttgcgaggtagctgcacgtctaaagcgcagacgcggcgtaccaccttcttctaggtcgcgtaggcgcaatgtaagtctggcagaccccagacccgatgcagaaacatggcctgccgagatttcGATCAccaccaagaccacgggggggctggctacagtcggaccccctBsgIBmgBIPshAIAM204ER206SI208DV210QI212SR214LR216RM218VE220ED222PA224HP226RY228IQ230TV232WG234LG236YV238FV240PD242GS244KA246SG248GS250GA252PP254TD256VS258LG260D2544-3560OmpR-OGRompR CDSVP163,1603,1803,2003,2203,2403,2603,2803,3003,320
cgagctccacttagacggcgaggacgtggcgatggcgcatgccgacgcgctagacgatttcgatctggacatgttgggggacggggattccccgggtccgggatttaccccccacgactccgccccctacggcgctctggatatggccgacttcgagtttgagcagatgtttaccgctcgaggtgaatctgccgctcctgcaccgctaccgcgtacggctgcgcgatctgctaaagctagacctgtacaaccccctgcccctaaggggcccaggccctaaatggggggtgctgaggcgggggatgccgcgagacctataccggctgaagctcaaactcgtctacaaatggPciIPfoISacISmaIXmaIBmgBITspMIEco53kIE262LH264LD266GE268DV270AM272AH274AD276AL278DD280FD282LD284ML286GD288GD290SP292GP294GF296TP298HD300SA302PY304GA306LD308MA310DF312EF314EQ316MF318T2544-3560OmpR-OGRVP163,3403,3603,3803,4003,4203,4403,4603,4803,500
gatgcccttggaattgacgagtacggtgggGCTAGTgctagcgGATCCACCGGTgTCTAGAAAGCTTtgaGGCCGGcctgcagggatcagcctcgactgtgccttctagttgccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaaggtgccactcccacctacgggaaccttaactgctcatgccacccCGATCAcgatcgcCTAGGTGGCCAcAGATCTTTCGAAactCCGGCCggacgtccctagtcggagctgacacggaagatcaacggtcggtagacaacaaacggggagggggcacggaaggaactgggaccttccacggtgagggtgAgeIBmtIFseINheIPstISbfIXbaIBamHISgrAIHindIIID320AL322GI324DE326YG328GA330SA332SG334ST336GV338*2544-3560BGH polyAOmpR-OGRVP163,5203,5403,5603,5803,6003,6203,6403,660
tgtcctttcctaataaaatgaggaaattgcatcgcattgtctgagtaggtgtcattctattctggggggtggggtggggcaggacagcaagggggaggattgggaagacaatagcaggcatgctggggatgcggtgggctctatggcttctgaggcggaaagaaccagctggggcacaggaaaggattattttactcctttaacgtagcgtaacagactcatccacagtaagataagaccccccaccccaccccgtcctgtcgttccccctcctaacccttctgttatcgtccgtacgacccctacgccacccgagataccgaagactccgcctttcttggtcgaccccgBGH polyA3,6803,7003,7203,7403,7603,7803,8003,8203,840
tctagggggtatccccacgcgccctgtagcggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgctacacttgccagcgccctagcgcccgctcctttcgctttcttcccttcctttctcgccacgttcgccggctttccccgtcaagctctaaatcgggggcagatcccccataggggtgcgcgggacatcgccgcgtaattcgcgccgcccacaccaccaatgcgcgtcgcactggcgatgtgaacggtcgcgggatcgcgggcgaggaaagcgaaagaagggaaggaaagagcggtgcaagcggccgaaaggggcagttcgagatttagcccccgf1 origin3,8603,8803,9003,9203,9403,9603,9804,0004,020
tccctttagggttccgatttagtgctttacggcacctcgaccccaaaaaacttgattagggtgatggttcacgtagtgggccatcgccctgatagacggtttttcgccctttgacgttggagtccacgttctttaatagtggactcttgttccaaactggaacaacactcaacccagggaaatcccaaggctaaatcacgaaatgccgtggagctggggttttttgaactaatcccactaccaagtgcatcacccggtagcgggactatctgccaaaaagcgggaaactgcaacctcaggtgcaagaaattatcacctgagaacaaggtttgaccttgttgtgagttgggAloIBsaAIBsaXIDraIIIf1 origin4,0404,0604,0804,1004,1204,1404,1604,1804,200
tatctcggtctattcttttgatttataagggattttgccgatttcggcctattggttaaaaaatgagctgatttaacaaaaatttaacgcgaattaattctgtggaatgtgtgtcagttagggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatcatagagccagataagaaaactaaatattccctaaaacggctaaagccggataaccaattttttactcgactaaattgtttttaaattgcgcttaattaagacaccttacacacagtcaatcccacacctttcaggggtccgaggggtcgtccgtcttcatacgtttcgtacgtagNsiIPsiIXmnIBstAPIf1 originSV404,2204,2404,2604,2804,3004,3204,3404,360
tcaattagtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaatttttttagttaatcagtcgttggtccacacctttcaggggtccgaggggtcgtccgtcttcatacgtttcgtacgtagagttaatcagtcgttggtatcagggcggggattgaggcgggtagggcggggattgaggcgggtcaaggcgggtaagaggcggggtaccgactgattaaaaaaaNcoINsiISexAIBstAPISV404,3804,4004,4204,4404,4604,4804,5004,5204,540
tatttatgcagaggccgaggccgcctctgcctctgagctattccagaagtagtgaggaggcttttttggaggcctaggcttttgcaaaaagctcccgggagcttgtatatccattttcggatctgatcaagagacaggatgaggatcgtttcgcatgattgaacaagatggattgataaatacgtctccggctccggcggagacggagactcgataaggtcttcatcactcctccgaaaaaacctccggatccgaaaacgtttttcgagggccctcgaacatataggtaaaagcctagactagttctctgtcctactcctagcaaagcgtactaacttgttctacctaacBclISmaIXmaIAvrIIBseRITspMISV40NeoR4,5604,5804,6004,6204,6404,6604,6804,7004,720
cacgcaggttctccggccgcttgggtggagaggctattcggctatgactgggcacaacagacaatcggctgctctgatgccgccgtgttccggctgtcagcgcaggggcgcccggttctttttgtcaagaccgacctgtccggtgccctgaatgaactgcaggacgaggcagcgcgtgcgtccaagaggccggcgaacccacctctccgataagccgatactgacccgtgttgtctgttagccgacgagactacggcggcacaaggccgacagtcgcgtccccgcgggccaagaaaaacagttctggctggacaggccacgggacttacttgacgtcctgctccgtcgcgEagIKasINarIPstISfoIPluTINeoR4,7404,7604,7804,8004,8204,8404,8604,8804,900
ggctatcgtggctggccacgacgggcgttccttgcgcagctgtgctcgacgttgtcactgaagcgggaagggactggctgctattgggcgaagtgccggggcaggatctcctgtcatctcaccttgctcctgccgagaaagtatccatcatggctgatgcaatgcggcggctgcaccgatagcaccgaccggtgctgcccgcaaggaacgcgtcgacacgagctgcaacagtgacttcgcccttccctgaccgacgataacccgcttcacggccccgtcctagaggacagtagagtggaacgaggacggctctttcataggtagtaccgactacgttacgccgccgacgtFspIMscIPflFITth111INeoR4,9204,9404,9604,9805,0005,0205,0405,060
tacgcttgatccggctacctgcccattcgaccaccaagcgaaacatcgcatcgagcgagcacgtactcggatggaagccggtcttgtcgatcaggatgatctggacgaagagcatcaggggctcgcgccagccgaactgttcgccaggctcaaggcgcgcatgcccgacggcgagatgcgaactaggccgatggacgggtaagctggtggttcgctttgtagcgtagctcgctcgtgcatgagcctaccttcggccagaacagctagtcctactagacctgcttctcgtagtccccgagcgcggtcggcttgacaagcggtccgagttccgcgcgtacgggctgccgctcBsaAIBssHIINeoR5,0805,1005,1205,1405,1605,1805,2005,2205,240
gatctcgtcgtgacccatggcgatgcctgcttgccgaatatcatggtggaaaatggccgcttttctggattcatcgactgtggccggctgggtgtggcggaccgctatcaggacatagcgttggctacccgtgatattgctgaagagcttggcggcgaatgggctgaccgcttccctagagcagcactgggtaccgctacggacgaacggcttatagtaccaccttttaccggcgaaaagacctaagtagctgacaccggccgacccacaccgcctggcgatagtcctgtatcgcaaccgatgggcactataacgacttctcgaaccgccgcttacccgactggcgaaggNcoIRsrIINeoR5,2605,2805,3005,3205,3405,3605,3805,4005,420
tcgtgctttacggtatcgccgctcccgattcgcagcgcatcgccttctatcgccttcttgacgagttcttctgagcgggactctggggttcgaaatgaccgaccaagcgacgcccaacctgccatcacgagatttcgattccaccgccgccttctatgaaaggttgggcttcggaagcacgaaatgccatagcggcgagggctaagcgtcgcgtagcggaagatagcggaagaactgctcaagaagactcgccctgagaccccaagctttactggctggttcgctgcgggttggacggtagtgctctaaagctaaggtggcggcggaagatactttccaacccgaagcctNeoR5,4405,4605,4805,5005,5205,5405,5605,5805,600
atcgttttccgggacgccggctggatgatcctccagcgcggggatctcatgctggagttcttcgcccaccccaacttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaataaagcatttttttcactgcattctagttgtggtttgtccatagcaaaaggccctgcggccgacctactaggaggtcgcgcccctagagtacgacctcaagaagcgggtggggttgaacaaataacgtcgaatattaccaatgtttatttcgttatcgtagtgtttaaagtgtttatttcgtaaaaaaagtgacgtaagatcaacaccaaacaggtBsmIPfoIPsiISV40 polyA5,6205,6405,6605,6805,7005,7205,7405,760
aactcatcaatgtatcttattgagtagttacatagaatSV40 polyA5,780
  • Plasmid
Editing is disabled because sequence edits have been locked.
5794 bp42504500475050005250550025050075010001250AmpRNeoR

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

Version history

 Show full history
Change User Timestamp

Sequence Alignments

Saved alignments

Sequence Info

Tags

Name
Parent version
Folder
Topology
Start index
Locked
Created
--
Length
--
Export data
Split Workspace
Bases
5794