Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
LSM105 CMV-TO-CX3CR1-(noV2)-ADAR2dd(E488Q, T501A) (FLP-IN)
  • Sequence Map
Editing disabled on read-only sequence.
gaagatcctttgatcttttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaacttggtctgacagttacccttctaggaaactagaaaagatgccccagactgcgagtcaccttgcttttgagtgcaattccctaaaaccagtactctaatagtttttcctagaagtggatctaggaaaatttaatttttacttcaaaatttagttagatttcatatatactcatttgaaccagactgtcaatggLSM044pUC ori20406080100120140160
aatgcttaatcagtgaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctccagatttatcagcaataaattacgaattagtcactccgtggatagagtcgctagacagataaagcaagtaggtatcaacggactgaggggcagcacatctattgatgctatgccctcccgaatggtagaccggggtcacgacgttactatggcgctctgggtgcgagtggccgaggtctaaatagtcgttatttAhdIBsaIAmp (bla)LSM044180200220240260280300320340
ccagccagccggaagggccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagctagagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggtatggctggtcggtcggccttcccggctcgcgtcttcaccaggacgttgaaataggcggaggtaggtcagataattaacaacggcccttcgatctcattcatcaagcggtcaattatcaaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagcagcaaaccataccgaAclIFspINmeAIIIAmp (bla)LSM044360380400420440460480500520
tcattcagctccggttcccaacgatcaaggcgagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaaagtaagtcgaggccaagggttgctagttccgctcaatgtactagggggtacaacacgttttttcgccaatcgaggaagccaggaggctagcaacagtcttcattcaaccggcgtcacaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacggtaggcattPvuIAmp (bla)LSM044540560580600620640660680700
gatgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttctacgaaaagacactgaccactcatgagttggttcagtaagactcttatcacatacgccgctggctcaacgagaacgggccgcagttatgccctattatggcgcggtgtatcgtcttgaaattttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcctagaaAclIBcgIXmnIAmp (bla)LSM044720740760780800820840860
accgctgttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatattggcgacaactctaggtcaagctacattgggtgagcacgtgggttgactagaagtcgtagaaaatgaaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgttttttcccttattcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataSspIAmp (bla)bla promoterLSM0448809009209409609801,0001,0201,040
tattgaagcatttatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgccacctgacgtcgacggatcgggagatctcccgatcccctatggtgcactctcagtacaatctgctctgaataacttcgtaaatagtcccaataacagagtactcgcctatgtataaacttacataaatctttttatttgtttatccccaaggcgcgtgtaaaggggcttttcacggtggactgcagctgcctagccctctagagggctaggggataccacgtgagagtcatgttagacgagactSgrDIbla promoterLSM0441,0601,0801,1001,1201,1401,1601,1801,2001,220
tgccgcatagttaagccagtatctgctccctgcttgtgtgttggaggtcgctgagtagtgcgcgagcaaaatttaagctacaacaaggcaaggcttgaccgacaattgcatgaagaatctgcttagggttaggcgttttgcgctgcttcgtacgggccagatatacgcgttgacaacggcgtatcaattcggtcatagacgagggacgaacacacaacctccagcgactcatcacgcgctcgttttaaattcgatgttgttccgttccgaactggctgttaacgtacttcttagacgaatcccaatccgcaaaacgcgacgaagcatgcccggtctatatgcgcaactgtMfeIMluIBsiWILSM0441,2401,2601,2801,3001,3201,3401,3601,3801,400
ttgattattgactagttattaatagtaatcaattacggggtcattagttcatagcccatatatggagttccgcgttacataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacgtcaataatgacgtatgttcccatagtaacgccaatagggaactaataactgatcaataattatcattagttaatgccccagtaatcaagtatcgggtatatacctcaaggcgcaatgtattgaatgccatttaccgggcggaccgactggcgggttgctgggggcgggtaactgcagttattactgcatacaagggtatcattgcggttatcccSpeICMVCMV promoter (with TetOs)LSM0441,4201,4401,4601,4801,5001,5201,5401,560
actttccattgacgtcaatgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagtacgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatgaccttatgggactttcctacttggcagtacatcttgaaaggtaactgcagttacccacctcataaatgccatttgacgggtgaaccgtcatgtagttcacatagtatacggttcatgcgggggataactgcagttactgccatttaccgggcggaccgtaatacgggtcatgtactggaataccctgaaaggatgaaccgtcatgtagaNdeICMVCMV promoter (with TetOs)LSM0441,5801,6001,6201,6401,6601,6801,7001,7201,740
acgtattagtcatcgctattaccatggtgatgcggttttggcagtacatcaatgggcgtggatagcggtttgactcacggggatttccaagtctccaccccattgacgtcaatgggagtttgttttggcaccaaaatcaacgggactttccaaaatgtcgtaacaactccgcccctgcataatcagtagcgataatggtaccactacgccaaaaccgtcatgtagttacccgcacctatcgccaaactgagtgcccctaaaggttcagaggtggggtaactgcagttaccctcaaacaaaaccgtggttttagttgccctgaaaggttttacagcattgttgaggcggggCspCISnaBICMVCMV promoter (with TetOs)LSM0441,7601,7801,8001,8201,8401,8601,8801,9001,920
attgacgcaaatgggcggtaggcgtgtacggtgggaggtctatataagcagagctctccctatcagtgatagagatctccctatcagtgatagagatcgtcgacgagctcgtttagtgaaccgtcagatcgcctggagacgccatccacgctgttttgacctccatagaagacactaactgcgtttacccgccatccgcacatgccaccctccagatatattcgtctcgagagggatagtcactatctctagagggatagtcactatctctagcagctgctcgagcaaatcacttggcagtctagcggacctctgcggtaggtgcgacaaaactggaggtatcttctgtgSacISacIBsmBIEsp3ISgrDIEco53kIEco53kICMV promoter (with TetOs)CMVTetR binding sitesTetOTetOLSM0441,9401,9601,9802,0002,0202,0402,0602,0802,100
cgggaccgatccagcctccggaCTCTAGCGTTTAAACTTAAGCTTCGCCACCATGGATCAATTTCCAGAAAGTGTGACTGAAAATTTTGAGTATGACGACCTGGCAGAGGCCTGCTACATCGGCGATATTGTTGTCTTCGGCACTGTTTTCCTGAGCATTTTCTATTCCGTTATAgccctggctaggtcggaggcctGAGATCGCAAATTTGAATTCGAAGCGGTGGTACCTAGTTAAAGGTCTTTCACACTGACTTTTAAAACTCATACTGCTGGACCGTCTCCGGACGATGTAGCCGCTATAACAACAGAAGCCGTGACAAAAGGACTCGTAAAAGATAAGGCAATATPmeIStuIAflIIEcoNIHindIIIMD2QF4PE6SV8TE10NF12EY14DD16LA18EA20CY22IG24DI26VV28FG30TV32FL34SI36FY38SV40I2153-3242CX3CR1CMV pro...TetOs)LSM0442,1202,1402,1602,1802,2002,2202,2402,260
TTCGCCATTGGCCTCGTTGGAAATCTTCTGGTGGTGTTCGCGCTCACCAATAGTAAGAAGCCTAAAAGCGTGACAGACATTTATCTTCTTAACCTCGCATTGTCAGACTTGTTATTTGTCGCCACCCTGCCATTTTGGACCCACTATTTAATTAATGAGAAGGGACTTCACAACGAAGCGGTAACCGGAGCAACCTTTAGAAGACCACCACAAGCGCGAGTGGTTATCATTCTTCGGATTTTCGCACTGTCTGTAAATAGAAGAATTGGAGCGTAACAGTCTGAACAATAAACAGCGGTGGGACGGTAAAACCTGGGTGATAAATTAATTACTCTTCCCTGAAGTGTTGCPacIF42AI44GL46VG48NL50LV52VF54AL56TN58SK60KP62KS64VT66DI68YL70LN72LA74LS76DL78LF80VA82TL84PF86WT88HY90LI92NE94KG96LH98N2153-3242CX3CR12,2802,3002,3202,3402,3602,3802,4002,4202,440
CGATGTGTAAATTTACTACAGCCTTCTTCTTCATAGGGTTCTTTGGGTCAATCTTCTTTATAACAGTCATATCAATTGATAGATATCTGGCCATCGTTCTGGCTGCCAACAGCATGAATAATCGGACAGTGCAACATGGTGTAACTATTAGTCTGGGCGTATGGGCCGCCGCTATGCTACACATTTAAATGATGTCGGAAGAAGAAGTATCCCAAGAAACCCAGTTAGAAGAAATATTGTCAGTATAGTTAACTATCTATAGACCGGTAGCAAGACCGACGGTTGTCGTACTTATTAGCCTGTCACGTTGTACCACATTGATAATCAGACCCGCATACCCGGCGGCGATAMfeIMscIBstXIEcoRVA100MC102KF104TT106AF108FF110IG112FF114GS116IF118FI120TV122IS124ID126RY128LA130IV132LA134AN136SM138NN140RT142VQ144HG146VT148IS150LG152VW154AA156AI1582153-3242CX3CR12,4602,4802,5002,5202,5402,5602,5802,6002,620
TTTAGTGGCCGCTCCCCAATTCATGTTTACCAAACAAAAGGAAAACGAATGCTTGGGAGATTATCCAGAAGTACTGCAGGAAATTTGGCCCGTACTCAGAAACGTGGAGACAAACTTTCTTGGGTTTCTGTTGCCACTTCTGATTATGTCCTATTGCTACTTTAGGATAATCCAAAAATCACCGGCGAGGGGTTAAGTACAAATGGTTTGTTTTCCTTTTGCTTACGAACCCTCTAATAGGTCTTCATGACGTCCTTTAAACCGGGCATGAGTCTTTGCACCTCTGTTTGAAAGAACCCAAAGACAACGGTGAAGACTAATACAGGATAACGATGAAATCCTATTAGGTTBsmILV160AA162PQ164FM166FT168KQ170KE172NE174CL176GD178YP180EV182LQ184EI186WP188VL190RN192VE194TN196FL198GF200LL202PL204LI206MS208YC210YF212RI214IQ2162153-3242CX3CR12,6402,6602,6802,7002,7202,7402,7602,7802,800
ACCCTCTTTAGCTGTAAGAATCACAAGAAAGCCAAAGCTATCAAGCTCATATTACTGGTAGTAATTGTCTTCTTTCTCTTCTGGACGCCTTATAATGTCATGATTTTCTTGGAGACACTCAAGCTCTATGATTTCTTTCCATCTTGCGATATGCGCAAGGATTTGAGGCTTGCTCTGGGAGAAATCGACATTCTTAGTGTTCTTTCGGTTTCGATAGTTCGAGTATAATGACCATCATTAACAGAAGAAAGAGAAGACCTGCGGAATATTACAGTACTAAAAGAACCTCTGTGAGTTCGAGATACTAAAGAAAGGTAGAACGCTATACGCGTTCCTAAACTCCGAACGAGBplIFspITL218FS220CK222NH224KK226AK228AI230KL232IL234LV236VI238VF240FL242FW244TP246YN248VM250IF252LE254TL256KL258YD260FF262PS264CD266MR268KD270LR272LA2742153-3242CX3CR12,8202,8402,8602,8802,9002,9202,9402,960
TGTCTGTAACAGAAACAGTTGCTTTCAGTCACTGCTGCTTAAACCCGTTGATCTATGCATTTGCCGGAGAAAAGTTCAGGCGTTATCTCTACCATCTTTATGGCAAGTGCCTTGCGGTGCTCTGCGGTCGGTCCGTCCATGTCGATTTCAGCTCCAGTGAAAGTCAAAGATCCAGACAGACATTGTCTTTGTCAACGAAAGTCAGTGACGACGAATTTGGGCAACTAGATACGTAAACGGCCTCTTTTCAAGTCCGCAATAGAGATGGTAGAAATACCGTTCACGGAACGCCACGAGACGCCAGCCAGGCAGGTACAGCTAAAGTCGAGGTCACTTTCAGTTTCTAGGTCBplINsiIBstXIRsrIILS276VT278ET280VA282FS284HC286CL288NP290LI292YA294FA296GE298KF300RR302YL304YH306LY308GK310CL312AV314LC316GR318SV320HV322DF324SS326SE328SQ330RS332R2153-3242CX3CR12,9803,0003,0203,0403,0603,0803,1003,1203,140
ACACGGGAGCGTTTTGAGTTCCAACTTCACTTACCACACCTCTGATGGTGATGCTCTGCTCCTGCTGGGTACCGGTGCTTTGCACTTGGATCAAACGCCATCTCGCCAGCCTATTCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAGGTTTTAGCTGACGCTGTCTCACGCCTGTGTGCCCTCGCAAAACTCAAGGTTGAAGTGAATGGTGTGGAGACTACCACTACGAGACGAGGACGACCCATGGCCACGAAACGTGAACCTAGTTTGCGGTAGAGCGGTCGGATAAGGGTCACTCCCAGAAGTCGACGTAAATGGCGTCCAAAATCGACTGCGACAGAGTGCGGACAgeIKpnIXcmIAcc65IDQ2TP4SR6QP8IP10SE12GL14QL16HL18PQ20VL22AD24AV26SR28L3239-4524H334GS336VL338SS340NF342TY344HT346SD348GD350AL352LL354LG356TG358AL360HL362D2153-3242hADAR2 cat domainCX3CR1LSM0443,1603,1803,2003,2203,2403,2603,2803,3003,320
GTCCTGGGTAAGTTTGGTGACCTGACCGACAACTTCTCCTCCCCTCACGCTCGCAGAAAAGTGCTGGCTGGAGTCGTCATGACAACAGGCACAGATGTTAAAGATGCCAAGGTGATAAGTGTTTCTACAGGAACAAAATGTATTAATGGTGAATACATGAGTGATCGTGGCCTTGCAGGACCCATTCAAACCACTGGACTGGCTGTTGAAGAGGAGGGGAGTGCGAGCGTCTTTTCACGACCGACCTCAGCAGTACTGTTGTCCGTGTCTACAATTTCTACGGTTCCACTATTCACAAAGATGTCCTTGTTTTACATAATTACCACTTATGTACTCACTAGCACCGGAACBseRIBstEIIV30LG32KF34GD36LT38DN40FS42SP44HA46RR48KV50LA52GV54VM56TT58GT60DV62KD64AK66VI68SV70ST72GT74KC76IN78GE80YM82SD84RG86L3239-4524hADAR2 cat domainLSM0443,3403,3603,3803,4003,4203,4403,4603,4803,500
CATTAAATGACTGCCATGCAGAAATAATATCTCGGAGATCCTTGCTCAGATTTCTTTATACACAACTTGAGCTTTACTTAAATAACAAAGATGATCAAAAAAGATCCATCTTTCAGAAATCAGAGCGAGGGGGGTTTAGGCTGAAGGAGAATGTCCAGTTTCATCTGTACATCAGGTAATTTACTGACGGTACGTCTTTATTATAGAGCCTCTAGGAACGAGTCTAAAGAAATATGTGTTGAACTCGAAATGAATTTATTGTTTCTACTAGTTTTTTCTAGGTAGAAAGTCTTTAGTCTCGCTCCCCCCAAATCCGACTTCCTCTTACAGGTCAAAGTAGACATGTAGTCBclIBsrGIA88LN90DC92HA94EI96IS98RR100SL102LR104FL106YT108QL110EL112YL114NN116KD118DQ120KR122SI124FQ126KS128ER130GG132FR134LK136EN138VQ140FH142LY144IS1463239-4524hADAR2 cat domainLSM0443,5203,5403,5603,5803,6003,6203,6403,660
CACCTCTCCCTGTGGAGATGCCAGAATCTTCTCACCACATGAGCCAATCCTGGAAGAACCAGCAGATAGACACCCAAATCGTAAAGCAAGAGGACAGCTACGGACCAAAATAGAGTCTGGTCAGGGGACGATTCCAGTGCGCTCCAATGCGAGCATCCAAGCGTGGGACGGGGTGGTGGAGAGGGACACCTCTACGGTCTTAGAAGAGTGGTGTACTCGGTTAGGACCTTCTTGGTCGTCTATCTGTGGGTTTAGCATTTCGTTCTCCTGTCGATGCCTGGTTTTATCTCAGACCAGTCCCCTGCTAAGGTCACGCGAGGTTACGCTCGTAGGTTCGCACCCTGCCCCACBcgIPfoITS148PC150GD152AR154IF156SP158HE160PI162LE164EP166AD168RH170PN172RK174AR176GQ178LR180TK182IE184SG186QG188TI190PV192RS194NA196SI198QA200WD202GV2043239-4524hADAR2 cat domainLSM0443,6803,7003,7203,7403,7603,7803,8003,8203,840
CTGCAAGGGGAGCGGCTGCTCACCATGTCCTGCAGTGACAAGATTGCACGCTGGAACGTGGTGGGCATCCAGGGATCCCTGCTCAGCATTTTCGTGGAGCCCATTTACTTCTCGAGCATCATCCTGGGCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTACCAGCGGAGACGTTCCCCTCGCCGACGAGTGGTACAGGACGTCACTGTTCTAACGTGCGACCTTGCACCACCCGTAGGTCCCTAGGGACGAGTCGTAAAAGCACCTCGGGTAAATGAAGAGCTCGTAGTAGGACCCGTCGGAAATGGTGCCCCTGGTGGAAAGGTCCCGGTACATGGTCGCCTAvaIBlpITliIXhoIBamHIBsoBIPaeR7ILQ206GE208RL210LT212MS214CS216DK218IA220RW222NV224VG226IQ228GS230LL232SI234FV236EP238IY240FS242SI244IL246GS248LY250HG252DH254LS256RA258MY260QR2623239-4524hADAR2 cat domainLSM0443,8603,8803,9003,9203,9403,9603,9804,0004,020
TCTCCAACATAGAGGACCTGCCACCTCTCTACACCCTCAACAAGCCTTTGCTCAGTGGCATCAGCAATGCAGAAGCACGGCAGCCAGGGAAGGCCCCCAACTTCAGTGTCAACTGGACGGTAGGCGACTCCGCTATTGAGGTCATCAACGCCACGACTGGGAAGGATGAGCTGGGAGAGGTTGTATCTCCTGGACGGTGGAGAGATGTGGGAGTTGTTCGGAAACGAGTCACCGTAGTCGTTACGTCTTCGTGCCGTCGGTCCCTTCCGGGGGTTGAAGTCACAGTTGACCTGCCATCCGCTGAGGCGATAACTCCAGTAGTTGCGGTGCTGACCCTTCCTACTCGACCCPpuMIIS264NI266ED268LP270PL272YT274LN276KP278LL280SG282IS284NA286EA288RQ290PG292KA294PN296FS298VN300WT302VG304DS306AI308EV310IN312AT314TG316KD318EL320G3239-4524hADAR2 cat domainLSM0444,0404,0604,0804,1004,1204,1404,1604,1804,200
CCGCGCGTCCCGCCTGTGTAAGCACGCGTTGTACTGTCGCTGGATGCGTGTGCACGGCAAGGTTCCCTCCCACTTACTACGCTCCAAGATTACCAAACCCAACGTGTACCATGAGTCCAAGCTGGCGGCAAAGGAGTACCAGGCCGCCAAGGCGCGTCTGTTCACAGCCTTCATCGGCGCGCAGGGCGGACACATTCGTGCGCAACATGACAGCGACCTACGCACACGTGCCGTTCCAAGGGAGGGTGAATGATGCGAGGTTCTAATGGTTTGGGTTGCACATGGTACTCAGGTTCGACCGCCGTTTCCTCATGGTCCGGCGGTTCCGCGCAGACAAGTGTCGGAAGTAGMluIR322AS324RL326CK328HA330LY332CR334WM336RV338HG340KV342PS344HL346LR348SK350IT352KP354NV356YH358ES360KL362AA364KE366YQ368AA370KA372RL374FT376AF378I3239-4524hADAR2 cat domainLSM0444,2204,2404,2604,2804,3004,3204,3404,360
AAGGCGGGGCTGGGGGCCTGGGTGGAGAAGCCCACCGAGCAGGACCAGTTCTCACTCACGCCCtgagccgctcgaggagggcccgaacaaaaactcatctcagaagaggatctgaatagcgccgtcgaccatcatcatcatcatcattgagtttaaacccgctgatcagcctcgaTTCCGCCCCGACCCCCGGACCCACCTCTTCGGGTGGCTCGTCCTGGTCAAGAGTGAGTGCGGGactcggcgagctcctcccgggcttgtttttgagtagagtcttctcctagacttatcgcggcagctggtagtagtagtagtagtaactcaaatttgggcgactagtcggagctApaIAvaIBclIPmeITliIXhoIBseRIBsoBIPspXIPaeR7IPspOMIK380AG382LG384AW386VE388KP390TE392QD394QF396SL398TP400*A402AR404GG406PE408QK410LI412SE414ED416LN418SA420VD422HH424HH426HH4283239-4524*1hADAR2 cat domainc-myc epitopePolyhi...e tagLSM0444,3804,4004,4204,4404,4604,4804,5004,5204,540
ctgtgccttctagttgccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaaggtgccactcccactgtcctttcctaataaaatgaggaaattgcatcgcattgtctgagtaggtgtcattctattctggggggtggggtggggcaggacagcaagggggagacacggaagatcaacggtcggtagacaacaaacggggagggggcacggaaggaactgggaccttccacggtgagggtgacaggaaaggattattttactcctttaacgtagcgtaacagactcatccacagtaagataagaccccccaccccaccccgtcctgtcgttccccctBGH polyadenylation sequenceLSM0444,5604,5804,6004,6204,6404,6604,6804,7004,720
ggattgggaagacaatagcaggcatgctggggatgcggtgggctctatggagatctatcgatgttctggggatgcggtgggctctatggcttctgaggcggaaagaaccagctggggctctagggggtatccccacgcgccctgtagcggcgcattaagcgcggcgggtgtggtgcctaacccttctgttatcgtccgtacgacccctacgccacccgagatacctctagatagctacaagacccctacgccacccgagataccgaagactccgcctttcttggtcgaccccgagatcccccataggggtgcgcgggacatcgccgcgtaattcgcgccgcccacaccacClaINspISphIBspDIBGH polyadenylation sequenceBGH pALSM0444,7404,7604,7804,8004,8204,8404,8604,8804,900
gttacgcgcagcgtgaccgctacacttgccagcgccctagcgcccgctcctttcgctttcttcccttcctttctcgccacgttcgccggctttccccgtcaagctctaaatcgggggtccctttagggttccgatttagtgctttacggcacctcgaccccaaaaaacttgattacaatgcgcgtcgcactggcgatgtgaacggtcgcgggatcgcgggcgaggaaagcgaaagaagggaaggaaagagcggtgcaagcggccgaaaggggcagttcgagatttagcccccagggaaatcccaaggctaaatcacgaaatgccgtggagctggggttttttgaactaatKflINaeIPpuMINgoMIVLSM0444,9204,9404,9604,9805,0005,0205,0405,060
gggtgatggttcacgtacctagaagttcctattccgaagttcctattctctagaaagtataggaacttccttggccaaaaagcctgaactcaccgcgacgtctgtcgagaagtttctgatcgaaaagttcgacagcgtctccgacctgatgcagctctcggagggcgaagaatctcccactaccaagtgcatggatcttcaaggataaggcttcaaggataagagatctttcatatccttgaaggaaccggtttttcggacttgagtggcgctgcagacagctcttcaaagactagcttttcaagctgtcgcagaggctggactacgtcgagagcctcccgcttcttagaBarIMscIXbaIBsmBIEsp3IPshAIHygromycinFRTLSM0445,0805,1005,1205,1405,1605,1805,2005,2205,240
cgtgctttcagcttcgatgtaggagggcgtggatatgtcctgcgggtaaatagctgcgccgatggtttctacaaagatcgttatgtttatcggcactttgcatcggccgcgctcccgattccggaagtgcttgacattggggaattcagcgagagcctgacctattgcatctcccgcacgaaagtcgaagctacatcctcccgcacctatacaggacgcccatttatcgacgcggctaccaaagatgtttctagcaatacaaatagccgtgaaacgtagccggcgcgagggctaaggccttcacgaactgtaaccccttaagtcgctctcggactggataacgtagagggEcoRIHygromycinLSM0445,2605,2805,3005,3205,3405,3605,3805,4005,420
gccgtgcacagggtgtcacgttgcaagacctgcctgaaaccgaactgcccgctgttctgcagccggtcgcggaggccatggatgcgatcgctgcggccgatcttagccagacgagcgggttcggcccattcggaccgcaaggaatcggtcaatacactacatggcgtgatttcatcggcacgtgtcccacagtgcaacgttctggacggactttggcttgacgggcgacaagacgtcggccagcgcctccggtacctacgctagcgacgccggctagaatcggtctgctcgcccaagccgggtaagcctggcgttccttagccagttatgtgatgtaccgcactaaagtaNdeIPvuIAsiSIRsrIIBstAPIDraIIIHygromycinLSM0445,4405,4605,4805,5005,5205,5405,5605,5805,600
atgcgcgattgctgatccccatgtgtatcactggcaaactgtgatggacgacaccgtcagtgcgtccgtcgcgcaggctctcgatgagctgatgctttgggccgaggactgccccgaagtccggcacctcgtgcacgcggatttcggctccaacaatgtcctgacggacaatggctacgcgctaacgactaggggtacacatagtgaccgtttgacactacctgctgtggcagtcacgcaggcagcgcgtccgagagctactcgactacgaaacccggctcctgacggggcttcaggccgtggagcacgtgcgcctaaagccgaggttgttacaggactgcctgttaccgBstAPIDraIIINmeAIIIHygromycinLSM0445,6205,6405,6605,6805,7005,7205,7405,760
cgcataacagcggtcattgactggagcgaggcgatgttcggggattcccaatacgaggtcgccaacatcttcttctggaggccgtggttggcttgtatggagcagcagacgcgctacttcgagcggaggcatccggagcttgcaggatcgccgcggctccgggcgtatatgctccgcgtattgtcgccagtaactgacctcgctccgctacaagcccctaagggttatgctccagcggttgtagaagaagacctccggcaccaaccgaacatacctcgtcgtctgcgcgatgaagctcgcctccgtaggcctcgaacgtcctagcggcgccgaggcccgcatatacgaggAjuISacIIHygromycinLSM0445,7805,8005,8205,8405,8605,8805,9005,9205,940
gcattggtcttgaccaactctatcagagcttggttgacggcaatttcgatgatgcagcttgggcgcagggtcgatgcgacgcaatcgtccgatccggagccgggactgtcgggcgtacacaaatcgcccgcagaagcgcggccgtctggaccgatggctgtgtagaagtactcgccgtaaccagaactggttgagatagtctcgaaccaactgccgttaaagctactacgtcgaacccgcgtcccagctacgctgcgttagcaggctaggcctcggccctgacagcccgcatgtgtttagcgggcgtcttcgcgccggcagacctggctaccgacacatcttcatgagcgHygromycinLSM0445,9605,9806,0006,0206,0406,0606,0806,1006,120
cgatagtggaaaccgacgccccagcactcgtccgagggcaaaggaatagcacgtactacgagatttcgattccaccgccgccttctatgaaaggttgggcttcggaatcgttttccgggacgccggctggatgatcctccagcgcggggatctcatgctggagttcttcgcccacgctatcacctttggctgcggggtcgtgagcaggctcccgtttccttatcgtgcatgatgctctaaagctaaggtggcggcggaagatactttccaacccgaagccttagcaaaaggccctgcggccgacctactaggaggtcgcgcccctagagtacgacctcaagaagcgggtgNaeIPfoINgoMIVHygromycinLSM0446,1406,1606,1806,2006,2206,2406,2606,2806,300
cccaacttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaataaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttatcatgtctgtataccgtcgacctctagctagagcttggcgtaatcatggtgggttgaacaaataacgtcgaatattaccaatgtttatttcgttatcgtagtgtttaaagtgtttatttcgtaaaaaaagtgacgtaagatcaacaccaaacaggtttgagtagttacatagaatagtacagacatatggcagctggagatcgatctcgaaccgcattagtaccaBsmIBstZ17ISV40 pALSM0446,3206,3406,3606,3806,4006,4206,4406,460
catagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaactcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagctgcattaatggtatcgacaaaggacacactttaacaataggcgagtgttaaggtgtgttgtatgctcggccttcgtatttcacatttcggaccccacggattactcactcgattgagtgtaattaacgcaacgcgagtgacgggcgaaaggtcagccctttggacagcacggtcgacgtaattacLSM0446,4806,5006,5206,5406,5606,5806,6006,6206,640
aatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgtgagcattagccggttgcgcgcccctctccgccaaacgcataacccgcgagaaggcgaaggagcgagtgactgagcgacgcgagccagcaagccgacgccgctcgccatagtcgagtgagtttccgccattatgccaataggtgtcttagtcccctattgcgtcctttcttgtacactcgtNspIPciISapIBspQILSM0446,6606,6806,7006,7206,7406,7606,7806,8006,820
aaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttccataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctctttccggtcgttttccggtccttggcatttttccggcgcaacgaccgcaaaaaggtatccgaggcggggggactgctcgtagtgtttttagctgcgagttcagtctccaccgctttgggctgtcctgatatttctatggtccgcaaagggggaccttcgagggagcacgcgagagLSM044pUC ori6,8406,8606,8806,9006,9206,9406,9606,9807,000
ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtggcgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagctgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaagacaaggctgggacggcgaatggcctatggacaggcggaaagagggaagcccttcgcaccgcgaaagagtatcgagtgcgacatccatagagtcaagccacatccagcaagcgaggttcgacccgacacacgtgcttggggggcaagtcgggctggcgacgcggaataggccattLSM044pUC ori7,0207,0407,0607,0807,1007,1207,1407,160
ctatcgtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaactacggctacactagaaggacagtatttggtatctgcgctctgctgaagccagatagcagaactcaggttgggccattctgtgctgaatagcggtgaccgtcgtcggtgaccattgtcctaatcgtctcgctccatacatccgccacgatgtctcaagaacttcaccaccggattgatgccgatgtgatcttcctgtcataaaccatagacgcgagacgacttcggtLSM044pUC ori7,1807,2007,2207,2407,2607,2807,3007,3207,340
gttaccttcggaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaacaatggaagcctttttctcaaccatcgagaactaggccgtttgtttggtggcgaccatcgccaccaaaaaaacaaacgttcgtcgtctaatgcgcgtctttttttcctagagttLSM044pUC ori7,3607,3807,4007,4207,4407,460
  • Plasmid
Editing disabled on read-only sequence.
7464 bp550060006500700050010001500LSM044HygromycinCMV promoter (with TetOs)CMVSV40 pAbla promoterAmp (bla)pUC oriEKo152.2 (DNA)FlpInF2 (DNA)EKo152.4 (DNA)NK164-RBPMS-A-for (DNA)XZp025.1 (DNA)oLSM0275 (DNA)YH029.1 (DNA)oLSM0299 (DNA)oLSM0287 (DNA)pNSK174 (DNA)oLSM0302 (DNA)XZp032.3 (DNA)oLSM0269 (DNA)XZp095.6 (DNA)EKo330.4 (DNA)oLSM0261 (DNA)pNSK053 (DNA)YXo033.4 (DNA)pNK018 (DNA)bghF (DNA)EKo326.3 (DNA)oLSM0086 (DNA)EKo152.1 (DNA)oLSM-pUC_ori_F (DNA)pUCoriR (DNA)AhdIBsaI,NmeAIIIFspI,AclIPvuIBcgIAclIXmnIoLSM0054 (DNA),oLSM0053 (DNA)SspISgrDIFlpInF1 (DNA)FlpInF (DNA),oLSM039 (DNA),MfeIBsiWIEKo279.1 (DNA),EKo272.1 (DNA),MluI,SpeIEK_CMVFa (DNA)EK_CMVFb (DNA)EK_CMVFc (DNA)NdeIEK_CMVFd (DNA),SnaBIEK_CMVFe (DNA)CspCINdeINmeAIIIBstAPI,DraIIIAjuISacIIHyg_F (DNA)PfoI,NgoMIV,NaeISV40PA_R (DNA),SV40pA-R Genewiz (DNA)BsmIBstZ17IM13R Genewiz (DNA)M13-48REV Genewiz (DNA)BspQI,SapIpUCori5F (DNA)PciINspIoLSM-pUC_ori_R (DNA)

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

History

Lineage

 Show Full History
Change User Timestamp

Sequence Alignments

Saved Alignments

Sequence Info

Tags

Name
Parent Version
Folder
Topology
Start Index
Locked
Created
--
Length
--
Export Data
Split Workspace
Bases
7464