Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
pZZ176 - CDT-1D
  • Sequence Map
Editing disabled on read-only sequence.
ggctgagcaataccaagagcatcgaagagctcgggatgcttgactggcagctcgataacctccttgatctccttgatctgcttgtcgagacctccaaccatctcgtatgttgaatcaggaaccttttcgaccatcataagcgaaaccagcgggtccaccttattcggaagaagctccgactcgttatggttctcgtagcttctcgagccctacgaactgaccgtcgagctattggaggaactagaggaactagacgaacagctctggaggttggtagagcatacaacttagtccttggaaaagctggtagtattcgctttggtcgcccaggtggaataagccttcttcgaPhis-7220406080100120140160
tatgaagagcatagctgtcggctcggagtgcaacacgtgctcctgtgttcagtgagttgatatcaatggatttatccacgtcgacgacatattttccttctggatgaactttcacaagaactttcttcttatccatggctttgctcacttcaccgacgtaacttccttgctcgtgatacttctcgtatcgacagccgagcctcacgttgtgcacgaggacacaagtcactcaactatagttacctaaataggtgcagctgctgtataaaaggaagacctacttgaaagtgttcttgaaagaagaataggtaccgaaacgagtgaagtggctgcattgaaggaacgagcacAccINcoISalIBmgBISgrDIBstAPIPhis-72180200220240260280300320340
gagctgctgaagctcttctttcagcatacgaacttttgtgttgagctcattacgctgagcttgcagacgacgcacattttgtgatttgtcggccactttttgctgaaatacttgataaacccttgggctaaactttttaaaaaatacaacaaacctgcgcatcatcgacttttgtctcgacgacttcgagaagaaagtcgtatgcttgaaaacacaactcgagtaatgcgactcgaacgtctgctgcgtgtaaaacactaaacagccggtgaaaaacgactttatgaactatttgggaacccgatttgaaaaattttttatgttgtttggacgcgtagtagctgaaaacaPhis-72360380400420440460480500520
gctgaaatatttgcgaagagttttctcatcggattcttcggtcaatttttgagccgttggcttagaagggtcagctgatgaagcagtagaagcaggtggagccattaacactggaaaaaataaataatagctttaaataagttgagactaataaaaactgaaataacacgacaagcgactttataaacgcttctcaaaagagtagcctaagaagccagttaaaaactcggcaaccgaatcttcccagtcgactacttcgtcatcttcgtccacctcggtaattgtgaccttttttatttattatcgaaatttattcaactctgattatttttgactttattgtgctgttcPhis-72540560580600620640660680700
aaacgtgtggatctctcatttttccctggaaattgaattttcaagccaatttatcgaaaaaatcgcctaaaaaaacgaattcaaaccttgaaaactgataaaaattgagaaactttaaaaatgatgatatttcaaccggagaaccaatatggcgtcaattgtggcgccacgtacgtttgcacacctagagagtaaaaagggacctttaacttaaaagttcggttaaatagcttttttagcggatttttttgcttaagtttggaacttttgactatttttaactctttgaaatttttactactataaagttggcctcttggttataccgcagttaacaccgcggtgcatgcKasIMfeINarISfoIBsiWIPluTIPhis-72720740760780800820840860
caatgctgtacacgccgacgcaaaaatgcacagttgtgtttacgttaaatttaaagaaatattagattgatttcctcgttttcatgttaatttcttgatgtttttcttcgaaatttagaaaattaaagatttttcgtccaatttactgtttttatcttcaaaattacccgcagaagttacgacatgtgcggctgcgtttttacgtgtcaacacaaatgcaatttaaatttctttataatctaactaaaggagcaaaagtacaattaaagaactacaaaaagaagctttaaatcttttaatttctaaaaagcaggttaaatgacaaaaatagaagttttaatgggcgtcttAleIPhis-728809009209409609801,0001,0201,040
atttgttataaacctttatttagatctggaaatgcgtttttttctgaaacttcctcaaatcatttagaaaatattaatatttgaagaggaatatttttagagtatccagtatttcaattttctgtggaattgagaaaaattactgtttctgtttttttttttttttgaaatttcataaacaatatttggaaataaatctagacctttacgcaaaaaaagactttgaaggagtttagtaaatcttttataattataaacttctccttataaaaatctcataggtcataaagttaaaagacaccttaactctttttaatgacaaagacaaaaaaaaaaaaaaactttaaagtBglIIPhis-721,0601,0801,1001,1201,1401,1601,1801,2001,220
acttgaacagtaatcagattttttactattagtgcaatttctttgaatattttaaataaaaaatcctcctcgatcccaagaaactccaatttttactatattttctcaagaaatgcgttcaaagtccgcaatcgcgcgagagcagcggcgacactgaagagaccgcagagaagcgtgaacttgtcattagtctaaaaaatgataatcacgttaaagaaacttataaaatttattttttaggaggagctagggttctttgaggttaaaaatgatataaaagagttctttacgcaagtttcaggcgttagcgcgctctcgtcgccgctgtgacttctctggcgtctcttcgcPhis-721,2401,2601,2801,3001,3201,3401,3601,3801,400
gcacgcatttcggaaatagtgtgtgtttgcaagagagtggccccccgattaaactagcgcgcgtaaaatttttgcattttgttgtttcgttccgtctggaaaattcgaatttcgcagcattttaattcatatctcagctcatttcgcatattttttcctgaaaatttccagtttgcgtgcgtaaagcctttatcacacacaaacgttctctcaccggggggctaatttgatcgcgcgcattttaaaaacgtaaaacaacaaagcaaggcagaccttttaagcttaaagcgtcgtaaaattaagtatagagtcgagtaaagcgtataaaaaaggacttttaaaggtcaaacPhis-721,4201,4401,4601,4801,5001,5201,5401,560
gtccgttaccttattccggttaatatactcgaatttcataaaaatctacggatgaatcgctaagttatcgctagaaatgaaattctttaaaaaattttgcccgattagtaatttttctgaaaatccacgtggattcaggatccttcgcgacctgaagtttaaagttaattttccacaggcaatggaataaggccaattatatgagcttaaagtatttttagatgcctacttagcgattcaatagcgatctttactttaagaaattttttaaaacgggctaatcattaaaaagacttttaggtgcacctaagtcctaggaagcgctggacttcaaatttcaattaaaaggtNruIPhis-721,5801,6001,6201,6401,6601,6801,7001,7201,740
gattttcaatgaggatttttgaaagatttgatatttcttggcataagttttccagctttaatccggatttggtccagaccccacaaaatcgatacgacaaaaggggggaggaggcggagacttggcacaatgccaagtctttgctctctgtgtcgtcacgtgtcttcgtgttggcctaaaagttactcctaaaaactttctaaactataaagaaccgtattcaaaaggtcgaaattaggcctaaaccaggtctggggtgttttagctatgctgttttcccccctcctccgcctctgaaccgtgttacggttcagaaacgagagacacagcagtgcacagaagcacaaccgPhis-721,7601,7801,8001,8201,8401,8601,8801,9001,920
tgagtatcaaacgttatagtgtggacaccaatttggcttcgtacttcttactcgttcccgccccgccccgacaccattcgaatatatattgtcagttgttctgtttgtcgtcgtgatgagaggtgcgtgcgtgtgcgcgcgcgctctcccaacttttcggaccattttgcgggctactcatagtttgcaatatcacacctgtggttaaaccgaagcatgaagaatgagcaagggcggggcggggctgtggtaagcttatatataacagtcaacaagacaaacagcagcactactctccacgcacgcacacgcgcgcgcgagagggttgaaaagcctggtaaaacgcccgaMauBIPhis-721,9401,9601,9802,0002,0202,0402,0602,0802,100
ttatactgcaatttggctcatttcttctccttttttttccacaggcttattttgtactctcgagttgacagcctttttcggtataggttggaagtagtccattaaagtagatgtttcttaagaatttatcggcttagcatcgatttcgacctagttagatgccacgtttatgcgcaatatgacgttaaaccgagtaaagaagaggaaaaaaaaggtgtccgaataaaacatgagagctcaactgtcggaaaaagccatatccaaccttcatcaggtaatttcatctacaaagaattcttaaatagccgaatcgtagctaaagctggatcaatctacggtgcaaatacgcgPhis-722,1202,1402,1602,1802,2002,2202,2402,260
gaagcggccgcgtcgcggcgagaatttcagtgcggttttacgggattatccattaaaatcaggaaaatcagcagaaaacttcttaacaaaactaatttttttagaaaagaatttagaaatacgtagtcttgaataattcagcaactttttcaaattttatgagaatttcgcaattcttcgccggcgcagcgccgctcttaaagtcacgccaaaatgccctaataggtaattttagtccttttagtcgtcttttgaagaattgttttgattaaaaaaatcttttcttaaatctttatgcatcagaacttattaagtcgttgaaaaagtttaaaatactcttaaagcgttaaEagINotIPhis-722,2802,3002,3202,3402,3602,3802,4002,4202,440
tcctacacctcctatttcatcatcacttccgaaatcctacgttatcgatcgaacacgcgacgcgaccgcagcgcacctactaagcgcgcgcatttcgaccgtgacgcgaccgcaacgcggtggtgtcagggtgcgcgcgctttttcaatcatatgtggtgcggtcgattccttcaaggatgtggaggataaagtagtagtgaaggctttaggatgcaatagctagcttgtgcgctgcgctggcgtcgcgtggatgattcgcgcgcgtaaagctggcactgcgctggcgttgcgccaccacagtcccacgcgcgcgaaaaagttagtatacaccacgccagctaaggaagtPhis-722,4602,4802,5002,5202,5402,5602,5802,6002,620
ttcatccttctgtatgcagctgctcatcagtttattgagcatctgctgtaccaattcgtactttaaattaaatattaagagtacattttctgtgtgctctgtatataaatgtctagaataaactgcaaacaagaattcttggctccatctttccctgaatcaatatcgatcgataaagtaggaagacatacgtcgacgagtagtcaaataactcgtagacgacatggttaagcatgaaatttaatttataattctcatgtaaaagacacacgagacatatatttacagatcttatttgacgtttgttcttaagaaccgaggtagaaagggacttagttatagctagctatPhis-722,6402,6602,6802,7002,7202,7402,7602,7802,800
gtgacacgcgacgcgaccgcaacgcgtagggccatttcatattgattcttcttctactcttccttcttctccttctgctctcacatttcctcactattccaaccattctcaattctcaatttccAGAACAACAATGGCTCGTgcaggcttaATGGTCTCAAAGGGTGAAGAAGATcactgtgcgctgcgctggcgttgcgcatcccggtaaagtataactaagaagaagatgagaaggaagaagaggaagacgagagtgtaaaggagtgataaggttggtaagagttaagagttaaaggTCTTGTTGTTACCGAGCAcgtccgaatTACCAGAGTTTCCCACTTCTTCTAMluIXcmIPhis-72mCherry2,8202,8402,8602,8802,9002,9202,9402,960
AACATGGCAATTATTAAAGAGTTTATGCGTTTCAAGGTGCATATGGAGGGATCTGTCAATGGGCATGAGTTTGAAATTGAAGGTGAAGGAGAAGGCCGACCATATGAGGGAACACAAACCGCAAAACTAAAGgtaagtttaaacatatatatactaactaaccctgattatttaaTTGTACCGTTAATAATTTCTCAAATACGCAAAGTTCCACGTATACCTCCCTAGACAGTTACCCGTACTCAAACTTTAACTTCCACTTCCTCTTCCGGCTGGTATACTCCCTTGTGTTTGGCGTTTTGATTTCcattcaaatttgtatatatatgattgattgggactaataaattmCherry2,9803,0003,0203,0403,0603,0803,1003,1203,140
attttcagGTAACTAAAGGCGGACCATTACCATTCGCCTGGGACATCCTCTCTCCACAGTTCATGTATGGAAGTAAAGCTTATGTTAAACATCCGGCAGATATACCAGATTATTTGAAACTTTCATTCCCGGAGGGTTTTAAGTGGGAACGCGTAATGAATTTTGAAGACGGAGGtaaaagtcCATTGATTTCCGCCTGGTAATGGTAAGCGGACCCTGTAGGAGAGAGGTGTCAAGTACATACCTTCATTTCGAATACAATTTGTAGGCCGTCTATATGGTCTAATAAACTTTGAAAGTAAGGGCCTCCCAAAATTCACCCTTGCGCATTACTTAAAACTTCTGCCTCCMluIBstXImCherry3,1603,1803,2003,2203,2403,2603,2803,3003,320
AGTTGTTACAGTGACGCAAGACTCAAGgtaagtttaaacagttcggtactaactaaccatacatatttaaattttcagCCTCCAAGATGGAGAATTTATTTATAAAGTCAAACTTCGAGGAACGAATTTCCCCTCGGATGGACCTGTTATGCAGAAGAAGACTATGGGATGGGAATCAACAATGTCACTGCGTTCTGAGTTCcattcaaatttgtcaagccatgattgattggtatgtataaatttaaaagtcGGAGGTTCTACCTCTTAAATAAATATTTCAGTTTGAAGCTCCTTGCTTAAAGGGGAGCCTACCTGGACAATACGTCTTCTTCTGATACCCTACCCTTmCherry3,3403,3603,3803,4003,4203,4403,4603,4803,500
GCTTCAAGTGAAAGAATGTACCCTGAAGACGGTGCTCTTAAGGGAGAGATTAAACAACGTCTTAAATTGAAAGATGGAGGACATTACGATGCTGAGgtaagtttaaacatgattttactaactaactaatctgatttaaattttcagGTGAAGACAACTTACAAAGCCAAAAAACCGAAGTTCACTTTCTTACATGGGACTTCTGCCACGAGAATTCCCTCTCTAATTTGTTGCAGAATTTAACTTTCTACCTCCTGTAATGCTACGACTCcattcaaatttgtactaaaatgattgattgattagactaaatttaaaagtcCACTTCTGTTGAATGTTTCGGTTTTTTGBarIBbvCImCherry3,5203,5403,5603,5803,6003,6203,6403,660
CAGTTCAGCTGCCAGGAGCGTACAATGTTAATATTAAACTGGATATCACCTCCCACAACGAGGATTACACTATCGTTGAGCAATATGAAAGAGCTGAAGGGCGGCACTCGACAGGTGGCATGGATGAATTGTATAAGACGtacccagctttcttgtacaaaATGAGTTCCCGGGTGTCAAGTCGACGGTCCTCGCATGTTACAATTATAATTTGACCTATAGTGGAGGGTGTTGCTCCTAATGTGATAGCAACTCGTTATACTTTCTCGACTTCCCGCCGTGAGCTGTCCACCGTACCTACTTAACATATTCTGCatgggtcgaaagaacatgtttTACTCAAGGGCCCASmaIXmaITspMImCherryCDT-...a.)3,6803,7003,7203,7403,7603,7803,8003,8203,840
GACTAGATCCAGGTCCCAGACTCCGCAGACTGCTGTAACCGACTTTTTCAAGgtaaattggagtttgaagttatgaattgcaattatttaatgtttttttttctttttcagACCACCAGAAAACCGAGAGCAAGAGGAGAAAAGAAGATTATCGATGAAAGCATCACAAAGACCACTGATCTAGGTCCAGGGTCTGAGGCGTCTGACGACATTGGCTGAAAAAGTTCcatttaacctcaaacttcaatacttaacgttaataaattacaaaaaaaaagaaaaagtcTGGTGGTCTTTTGGCTCTCGTTCTCCTCTTTTCTTCTAATAGCTACTTTCGTAGTGTTTCTGGTPpuMIEcoO109ICDT-1 (1-189a.a.)3,8603,8803,9003,9203,9403,9603,9804,0004,020
CTACAATTAAAGAAGTACAAATTCCTGCTGCTCCAATCGTCGAGAATAAATCCTCCCGAACTCGCGCTCGGACTCCATCCCGTCAAGCGGAATTATCGAGTTCCGGAACTCCGCCAAAAAAAGCTAGAGAAGCTGAAGCAGAAGCCCCTGAGCTTCCCAAAATCCATGAAGATATGATGTTAATTTCTTCATGTTTAAGGACGACGAGGTTAGCAGCTCTTATTTAGGAGGGCTTGAGCGCGAGCCTGAGGTAGGGCAGTTCGCCTTAATAGCTCAAGGCCTTGAGGCGGTTTTTTTCGATCTCTTCGACTTCGTCTTCGGGGACTCGAAGGGTTTTAGGTACTTCTATACDT-1 (1-189a.a.)4,0404,0604,0804,1004,1204,1404,1604,1804,200
TATTCTGGAAAATCCGGCTCCTCAGAAGTCAGCGATCGATAAGCTAATGGAAGCATCCGGCCCAGCGAAAAAGAAGGCTGGAATTCGAACTGTTGCAGATTTACAAGCAAGAATAGCTGCAAAAGGAGCAGCTAAAGCGATTCATGAGCAAAATTTGAAGAACAAAACGAAGCAGATAAGACCTTTTAGGCCGAGGAGTCTTCAGTCGCTAGCTATTCGATTACCTTCGTAGGCCGGGTCGCTTTTTCTTCCGACCTTAAGCTTGACAACGTCTAAATGTTCGTTCTTATCGACGTTTTCCTCGTCGATTTCGCTAAGTACTCGTTTTAAACTTCTTGTTTTGCTTCGTCCDT-1 (1-189a.a.)4,2204,2404,2604,2804,3004,3204,3404,360
GTCGATGATCACGTGGAATTGCTGAAATCTCCGAAGAAACCAGTTATTGTTGAGCATCACAAATCACCTCAGAAATCCAAGGCCGCTTAATCTCAGCCACCACCAACTATTATTTCCTAAttttgccgtattttccatattttgttttgtatatttatccactcaccccctctctCAGCTACTAGTGCACCTTAACGACTTTAGAGGCTTCTTTGGTCAATAACAACTCGTAGTGTTTAGTGGAGTCTTTAGGTTCCGGCGAATTAGAGTCGGTGGTGGTTGATAATAAAGGATTaaaacggcataaaaggtataaaacaaaacatataaataggtgagtgggggagagaAjuIBclICDT-1 (1-189a.a.)pie-1 3'UTR4,3804,4004,4204,4404,4604,4804,5004,5204,540
ttgtcctgtgaatgaacttgtgccaaaaaagccaaaaataatttactttttttaaagacatattaaaacttgaaaacttggaacaatacggtgcgaaagcgaaacagagacagaaaaatgaacaaagagatccgtgaaaagtgaacgatgatttaggcttcttgttgggcggcgtaacaggacacttacttgaacacggttttttcggtttttattaaatgaaaaaaatttctgtataattttgaacttttgaaccttgttatgccacgctttcgctttgtctctgtctttttacttgtttctctaggcacttttcacttgctactaaatccgaagaacaacccgccgcapie-1 3'UTR4,5604,5804,6004,6204,6404,6604,6804,7004,720
ggatgagagtgatgttgtctcctttgagaagaattctgccgatcttgttgcgtcccttcgtcttcatgttcacctcctcggcttcgtcgaacacgacattcatgaactcgtcgaatccgatgatgtagccctcgagacggtgggtgacatcctcgtacaaccagatttggacccgcctactctcactacaacagaggaaactcttcttaagacggctagaacaacgcagggaagcagaagtacaagtggaggagccgaagcagcttgtgctgtaagtacttgagcagcttaggctactacatcgggagctctgccacccactgtaggagcatgttggtctaaacctgggcpie-1 3'UTR4,7404,7604,7804,8004,8204,8404,8604,8804,900
agtgcggttttggagatatctgaaatttgggaaattgttttctactgattagtgaaaaaatattacctgaagatgaggttcacaggctgaaccatcactttgttgagctttctcgtcgacatttttgcgggatgatctgtaaaaatcaatatattttttgaaagacacaaatttttcacgccaaaacctctatagactttaaaccctttaacaaaagatgactaatcacttttttataatggacttctactccaagtgtccgacttggtagtgaaacaactcgaaagagcagctgtaaaaacgccctactagacatttttagttatataaaaaactttctgtgtttaaaaAccISalIpie-1 3'UTR4,9204,9404,9604,9805,0005,0205,0405,060
taagataaatatcaagaaaactcgattttagcagctatttaagctcaaaaactacaatttatggctttaaaacataatttttcacattttacataaatttcaacgaaaaaaaatgccaaaaaacttcaaatttgagcagaaatcggctattttctcgacaaaaataatttcgaaaattctatttatagttcttttgagctaaaatcgtcgataaattcgagtttttgatgttaaataccgaaattttgtattaaaaagtgtaaaatgtatttaaagttgcttttttttacggttttttgaagtttaaactcgtctttagccgataaaagagctgtttttattaaagctttBsaBIpie-1 3'UTR5,0805,1005,1205,1405,1605,1805,2005,2205,240
attcgttcaaaaaagatgagtacgcaagcaccTGCAGGATATCTGGATCCACGAAGCTTCCCATGGTGACGTCACCGGTTCTAGATACCTAGGTGAGCTCTGGTACCCTCTAGTCAAGGCCTTAAGTGAGTCGTATTACGGactggccgtcgttttacaTGGCACGCCCTTCTATtaagcaagttttttctactcatgcgttcgtggACGTCCTATAGACCTAGGTGCTTCGAAGGGTACCACTGCAGTGGCCAAGATCTATGGATCCACTCGAGACCATGGGAGATCAGTTCCGGAATTCACTCAGCATAATGCCtgaccggcagcaaaatgtACCGTGCGGGAAGATAAgeIAhdIKpnINcoIPstISbfIStuIAvrIIAcc65Ipie-1 3'UTRpCFJ909 backbone5,2605,2805,3005,3205,3405,3605,3805,4005,420
TACAGggtttctgataacaaaccggttattaactcccaacaagggatgatttcaattcatcatgctcaaattgacccaaattaagttacatgacaaattcatcgcccttttcaactcttcttggctcatcatctgttattctgttcctattctgtctgcaccctatacccctttgATGTCccaaagactattgtttggccaataattgagggttgttccctactaaagttaagtagtacgagtttaactgggtttaattcaatgtactgtttaagtagcgggaaaagttgagaagaaccgagtagtagacaataagacaaggataagacagacgtgggatatggggaaacAgeIBtgZIpCFJ909 backbone5,4405,4605,4805,5005,5205,5405,5605,5805,600
catactctctcgtcattcctttcttggatagtgtcttcttctccccagctctgctacttctatgacttgcgcccgctgcttttccgctcgttcctctcctctctgacgtcttcttctgcttcttttctccttcctttttcccttctcaatcttcctctttttcccatttctgtcagtatgagagagcagtaaggaaagaacctatcacagaagaagaggggtcgagacgatgaagatactgaacgcgggcgacgaaaaggcgagcaaggagaggagagactgcagaagaagacgaagaaaagaggaaggaaaaagggaagagttagaaggagaaaaagggtaaagacagtpCFJ909 backbone5,6205,6405,6605,6805,7005,7205,7405,760
atcattcgaagaagaagaagaagaagaccctcattcatttcatttttttttctgtcggtgtgtgctgctcggttaagagtgagctctctattccacgtcttcttctttttcttcttcgattcgaatcaatcactccaccaaaacgcattcgtttttgggattcaccccgcggttctagtaagcttcttcttcttcttcttctgggagtaagtaaagtaaaaaaaaagacagccacacacgacgagccaattctcactcgagagataaggtgcagaagaagaaaaagaagaagctaagcttagttagtgaggtggttttgcgtaagcaaaaaccctaagtggggcgccaagBsmIBmgBIBsaBISacIIpCFJ909 backbone5,7805,8005,8205,8405,8605,8805,9005,9205,940
gcaaTaggtttctttttcaaattattagcgttataaatagaaaaatggtggagtttcaataaaaatgataatttacaaagtgtattttgattacatgtactcaaaaaggttgaaatttttcataccagttttccggaaatccatctgatatcattatcgtatttttctttttaaacgttAtccaaagaaaaagtttaataatcgcaatatttatctttttaccacctcaaagttatttttactattaaatgtttcacataaaactaatgtacatgagtttttccaactttaaaaagtatggtcaaaaggcctttaggtagactatagtaatagcataaaaagaaaaatttpCFJ909 backbone5,9605,9806,0006,0206,0406,0606,0806,1006,120
aatgttttcaaaaaaaaacaaaatatagctggttatttggcaccctctaattaccattttcctgtcacaccacactcttttccttcttccacttctttccgttttcagccgcttccaaccaaaccgatatgaaagccgagcaacaacgatcgattccacccggctcggcgaccttttacaaaagtttttttttgttttatatcgaccaataaaccgtgggagattaatggtaaaaggacagtgtggtgtgagaaaaggaagaaggtgaagaaaggcaaaagtcggcgaaggttggtttggctatactttcggctcgttgttgctagctaaggtgggccgagccgctggaapCFJ909 backbone6,1406,1606,1806,2006,2206,2406,2606,2806,300
cccgtcgcaggtgagactcagaaaactagagaaaccgctcaactaactcttgatatccgatttcattcttttctcttttctttttgttgaacttttccatatttccagatgccacggccaccaccaagcaccgaacaaggaatcacaacggaatcggagcttgcgaagaaagctcgggcagcgtccactctgagtcttttgatctctttggcgagttgattgagaactataggctaaagtaagaaaagagaaaagaaaaacaacttgaaaaggtataaaggtctacggtgccggtggtggttcgtggcttgttccttagtgttgccttagcctcgaacgcttctttcgagpCFJ909 backbone6,3206,3406,3606,3806,4006,4206,4406,460
aaatcactccgaacgacgttttagcacttccgggaatcactcaaggtatcttgctccctttggatttcagtttaaaacataaatttaggattcttatgctccccatctgcgaacatctataacatcgagttcaccaagttccaaatccgtgatctggacactgagcaagtgcttttttagtgaggcttgctgcaaaatcgtgaaggcccttagtgagttccatagaacgagggaaacctaaagtcaaattttgtatttaaatcctaagaatacgaggggtagacgcttgtagatattgtagctcaagtggttcaaggtttaggcactagacctgtgactcgttcacgaaapCFJ909 backbone6,4806,5006,5206,5406,5606,5806,6006,6206,640
tcgagatcgccaaaccggagaacgatcaggagaatgatgagtcgccacaggagtcggcaagatacgtgcgttatagatttgctccaaactttttgaaactcaaaacggtcggagcaactgtggaattcaaagtaggagacatcccaatccatcatttccgaatgatcgaacgtcaagctctagcggtttggcctcttgctagtcctcttactactcagcggtgtcctcagccgttctatgcacgcaatatctaaacgaggtttgaaaaactttgagttttgccagcctcgttgacaccttaagtttcatcctctgtagggttaggtagtaaaggcttactagcttgcagtpCFJ909 backbone6,6606,6806,7006,7206,7406,7606,7806,8006,820
cttcttcaaagatcgccttctgaagtgttttgactttgaattcggattctgtattccgaattcacgaaacaactgtgaacatatctatgagttccctcaactctctcaacaactcagtgagtcattattctaaaaagtacaattcaaaagactaatctctttttcagtggacgacgaagaagtttctagcggaagacttcacaaaactgaaacttaagcctaagacataaggcttaagtgctttgttgacacttgtatagatactcaagggagttgagagagttgttgagtcactcagtaataagatttttcatgttaagttttctgattagagaaaaagtcacctgctgpCFJ909 backbone6,8406,8606,8806,9006,9206,9406,9606,9807,000
atgatcaacaatccaaacgagactcgttctgacagcttctatttcgtcgataacaaactcgtcatgcacaacaaagccgactactcatatgatgcataaatatttaatacaaaaatgttctggataattattctgtcgaatagaaaaaaaactccaaatgtgattaaattccaattactagttgttaggtttgctctgagcaagactgtcgaagataaagcagctattgtttgagcagtacgtgttgtttcggctgatgagtatactacgtatttataaattatgtttttacaagacctattaataagacagcttatcttttttttgaggtttacactaatttaaggttaBclINsiIpCFJ909 backbone7,0207,0407,0607,0807,1007,1207,1407,160
aattcctgtctagtttgttccttccccttccccttctcatgttcaatgcattcctaagcttttcagttccccccttgtttctatattttttcgctgtcctgtcacactcgctaaaaacactaatcacacggaaatctgttttcaataaaaactccaactttaactcattttcaatttaaggacagatcaaacaaggaaggggaaggggaagagtacaagttacgtaaggattcgaaaagtcaaggggggaacaaagatataaaaaagcgacaggacagtgtgagcgatttttgtgattagtgtgcctttagacaaaagttatttttgaggttgaaattgagtaaaagttaBsmINsiIpCFJ909 backbone7,1807,2007,2207,2407,2607,2807,3007,3207,340
ttcaactgaaagattttttcattagagaatgtctagaactaggcccgggctaCGTAATACGACTCACTTAAGGGTGccggatcTGCGGCTTACTCACCAGACCTGGCCCCATCCGATTACCACCTATTCGCTTCGATGGGACACGCACTCGCTGAGCAGCGCTTCGATTCTTACGaagttgactttctaaaaaagtaatctcttacagatcttgatccgggcccgatGCATTATGCTGAGTGAATTCCCACggcctagACGCCGAATGAGTGGTCTGGACCGGGGTAGGCTAATGGTGGATAAGCGAAGCTACCCTGTGCGTGAGCGACTCGTCGCGAAGCTAAGAATGCAfeISmaISrfIXmaITspMIpCFJ909 backbone7,3607,3807,4007,4207,4407,4607,4807,5007,520
AAAGTGTGAAAAAATGGCTCGATGAATGGTTCGCCGCAAAAGACGATGAGTTCTACTGGCGTGGAATCCACAAATTGCCCGAGAGATGGGAAAAATGTGTAGCTAGCGACGGCAAATACTTTGAATAAATGATTTTTTCTTTTTCCACAAAATTTAACGTGTTTTTTGATTTAAATTTCACACTTTTTTACCGAGCTACTTACCAAGCGGCGTTTTCTGCTACTCAAGATGACCGCACCTTAGGTGTTTAACGGGCTCTCTACCCTTTTTACACATCGATCGCTGCCGTTTATGAAACTTATTTACTAAAAAAGAAAAAGGTGTTTTAAATTGCACAAAAAACTAAATTTBmtINheIpCFJ909 backbone7,5407,5607,5807,6007,6207,6407,6607,6807,700
AAAAACGACATTTCATACTTGTACACCTGATATCTAGATACCTAGGTGAGCTCTGGTACCCccctggcgttacccaacttaatcgccttgcagcacatccccctttcgccagctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggTTTTTGCTGTAAAGTATGAACATGTGGACTATAGATCTATGGATCCACTCGAGACCATGGGgggaccgcaatgggttgaattagcggaacgtcgtgtagggggaaagcggtcgaccgcattatcgcttctccgggcgtggctagcgggaagggttgtcaacgcgtcggacttaccBglIKpnIAvrIIAcc65IpCFJ909 backbone7,7207,7407,7607,7807,8007,8207,8407,860
cgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtgcaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacgcttaccgcggactacgccataaaagaggaatgcgtagacacgccataaagtgtggcgtataccacgtgagagtcacgttagacgagactacggcgtatcaattcggtcggggctgtgggcggttgtgggcgactgcgcgggactgcccgaacagacgagggccgtaggcgaatgKasINarISfoIPluTIBstAPIpCFJ909 backbone7,8807,9007,9207,9407,9607,9808,0008,0208,040
agacaagctgtgaccgtctccgggagctgcatgtgtcagaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaaccctctgttcgacactggcagaggccctcgacgtacacagtctccaaaagtggcagtagtggctttgcgcgctctgctttcccggagcactatgcggataaaaatatccaattacagtactattattaccaaagaatctgcagtccaccgtgaaaagcccctttacacgcgccttgggEcoO109IpCFJ909 backbone8,0608,0808,1008,1208,1408,1608,1808,2008,220
ctatttgtttatttttctaaatacattcaaatatgtatccgctcatgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgctcacccagaaacgataaacaaataaaaagatttatgtaagtttatacataggcgagtactctgttattgggactatttacgaagttattataactttttccttctcatactcataagttgtaaaggcacagcgggaataagggaaaaaacgccgtaaaacggaaggacaaaaacgagtgggtctttgpCFJ909 backbone8,2408,2608,2808,3008,3208,3408,3608,3808,400
gctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgacgccgggcgaccactttcattttctacgacttctagtcaacccacgtgctcacccaatgtagcttgacctagagttgtcgccattctaggaactctcaaaagcggggcttcttgcaaaaggttactactcgtgaaaatttcaagacgatacaccgcgccataatagggcataactgcggcccpCFJ909 backbone8,4208,4408,4608,4808,5008,5208,5408,560
caagagcaactcggtcgccgcatacactattctcagaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccgagttctcgttgagccagcggcgtatgtgataagagtcttactgaaccaactcatgagtggtcagtgtcttttcgtagaatgcctaccgtactgtcattctcttaatacgtcacgacggtattggtactcactattgtgacgccggttgaatgaagactgttgctagcctcctggctBtsIBtsIScaIBtsαIBtsαIpCFJ909 backbone8,5808,6008,6208,6408,6608,6808,7008,7208,740
aggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccgtcctcgattggcgaaaaaacgtgttgtaccccctagtacattgagcggaactagcaacccttggcctcgacttacttcggtatggtttgctgctcgcactgtggtgctacggacatcgttaccgttgttgcaacgcgtttgataattgaccgcttgatgaatgagatcgaagggcpCFJ909 backbone8,7608,7808,8008,8208,8408,8608,8808,9008,920
gcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctaccgttgttaattatctgacctacctccgcctatttcaacgtcctggtgaagacgcgagccgggaaggccgaccgaccaaataacgactatttagacctcggccactcgcacccagagcgccatagtaacgtcgtgaccccggtctaccattcgggagggcatagcatcaatagatgBglIBmrIBpmIpCFJ909 backbone8,9408,9608,9809,0009,0209,0409,0609,0809,100
acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgataatctgctgcccctcagtccgttgatacctacttgctttatctgtctagcgactctatccacggagtgactaattcgtaaccattgacagtctggttcaaatgagtatatatgaaatctaactaaattttgaagtaaaaattaaattttcctagatccacttctaggaaaaactattagAhdIpCFJ909 backbone9,1209,1409,1609,1809,2009,2209,2409,260
tcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctagtactggttttagggaattgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctagaagaactctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcgatggtcgccaccaaacaaacggcctagttctcgatggttgagapCFJ909 backbone9,2809,3009,3209,3409,3609,3809,4009,4209,440
ttttccgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttgaaaaggcttccattgaccgaagtcgtctcgcgtctatggtttatgacaggaagatcacatcggcatcaatccggtggtgaagttcttgagacatcgtggcggatgtatggagcgagacgattaggacaatggtcaccgacgacggtcaccgctattcagcacagaatggcccaacAlwNIpCFJ909 backbone9,4609,4809,5009,5209,5409,5609,5809,6009,620
gactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggtaagcgctgagttctgctatcaatggcctattccgcgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgctggatgtggcttgactctatggatgtcgcactcgatactctttcgcggtgcgaagggcttccctctttccgcctgtccataggccattcgcpCFJ909 backbone9,6409,6609,6809,7009,7209,7409,7609,7809,800
gcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggtcgtcccagccttgtcctctcgcgtgctccctcgaaggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagactgaactcgcagctaaaaacactacgagcagtccccccgcctcggatacctttttgcggtcgttgcgccggaaaaatgccaaggaccapCFJ909 backbone9,8209,8409,8609,8809,9009,9209,9409,960
cttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccGCACCGTACGTCTCGAGGAATTCTATCAGGTGTACAAGTATGAAATGTCGTTTCGAACATATAGATGTCTCGCAAACGTAAATAgaaaacgaccggaaaacgagtgtacaagaaaggacgcaataggggactaagacacctattggcataatggcggaaactcactcgactatggCGTGGCATGCAGAGCTCCTTAAGATAGTCCACATGTTCATACTTTACAGCAAAGCTTGTATATCTACAGAGCGTTTGCATTTATBsiWIpCFJ909 backbone9,98010,00010,02010,04010,06010,08010,10010,12010,140
TTTATCGATTGTCATAAAACTTTGACCTTGTGAAGTGTCAACCTTGACTGTCGAACCACCATAGTTTGGCGCGAATTGAGCGTCATAATTGTTTACTCTCAGTGCAGTCAACATGTCGAGTTTCGTGCCGAATAAAGAGCAAACGCGGACAGTATTAATTTTCTGTTTTCATTTGAAATAGCTAACAGTATTTTGAAACTGGAACACTTCACAGTTGGAACTGACAGCTTGGTGGTATCAAACCGCGCTTAACTCGCAGTATTAACAAATGAGAGTCACGTCAGTTGTACAGCTCAAAGCACGGCTTATTTCTCGTTTGCGCCTGTCATAATTAAAAGACAAAAGTAAACPflMIpCFJ909 backbone10,16010,18010,20010,22010,24010,26010,28010,30010,320
AAGAAAACAGCTGCGGccggatccaggaaacagctatgaccatgATTACGCCAAGCTACGTAATACGACTCATTCTTTTGTCGACGCCggcctaggtcctttgtcgatactggtacTAATGCGGTTCGATGCATTATGCTGAGTEagIpCFJ909 backbone10,34010,36010,380
  • Plasmid
Editing disabled on read-only sequence.
10397 bp75008000850090009500100005001000150020002500

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

History

Lineage

 Show Full History
Change User Timestamp

Sequence Alignments

Saved Alignments

Sequence Info

Tags

Name
Parent Version
Folder
Topology
Start Index
Locked
Created
--
Length
--
Export Data
Split Workspace
Bases
10397