Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Create account

Sign up with GoogleI already have an account
Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
Advanced Settings
  • 0 feature results
pOMRP2
  • Sequence Map
    Editing disabled on read-only sequence.
    atacctgtccgcctttctcccttcgggaagcgtggcgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagctgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggtatatggacaggcggaaagagggaagcccttcgcaccgcgaaagagtatcgagtgcgacatccatagagtcaagccacatccagcaagcgaggttcgacccgacacacgtgcttggggggcaagtcgggctggcgacgcggaataggccattgatagcagaactcaggttgggccatApaLIHaeIIsourcesourceori20406080100120140160
    agacacgacttatcgccactggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaactacggctacactagaagaacagtatttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggtatctgtgctgaatagcggtgaccgtcgtcggtgaccattgtcctaatcgtctcgctccatacatccgccacgatgtctcaagaacttcaccaccggattgatgccgatgtgatcttcttgtcataaaccatagacgcgagacgacttcggtcaatggaagcctttttctcaaccatAlwNIBB seq FORsourceori180200220240260280300320340
    gctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaaggcctactattagcaacaacgatcctttgatcttttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattcgagaactaggccgtttgtttggtggcgaccatcgccaccaaaaaaacaaacgttcgtcgtctaatgcgcgtctttttttcctagagttcttccggatgataatcgttgttgctaggaaactagaaaagatgccccagactgcgagtcaccttgcttttgagtgcaattccctaaStuIupstream annealdownstream anneal20bp ra...quencesourceori360380400420440460480500520
    ttggtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgacaaccagtactctaatagtttttcctagaagtggatctaggaaaatttaatttttacttcaaaatttagttagatttcatatatactcatttgaaccagactgtcaatggttacgaattagtcactccgtggatagagtcgctagacagataaagcaagtaggtatcaacggactgAmpRpOpen ori anneal REVBB seq REVsource540560580600620640660680700
    tccccgtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagaaccacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctataggggcagcacatctattgatgctatgccctcccgaatggtagaccggggtcacgacgttactatggcgctcttggtgcgagtggccgaggtctaaatagtcgttatttggtcggtcggccttcccggctcgcgtcttcaccaggacgttgaaataggcggaggtaggtcagataAhdIBglINmeAIIIAmpRsource720740760780800820840860
    taattgttgccgggaagctagagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggcgagttacatgatcccccatgttgtgcaaaaaagcgattaacaacggcccttcgatctcattcatcaagcggtcaattatcaaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagcagcaaaccataccgaagtaagtcgaggccaagggttgctagttccgctcaatgtactagggggtacaacacgttttttcgcAseIFspIAmpRsource8809009209409609801,0001,0201,040
    gttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggcgaccgacaatcgaggaagccaggaggctagcaacagtcttcattcaaccggcgtcacaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacggtaggcattctacgaaaagacactgaccactcatgagttggttcagtaagactcttatcacatacgccgctggctBtsIBtsIPvuIScaIBtsαIBtsαIAmpRsource1,0601,0801,1001,1201,1401,1601,1801,2001,220
    gttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttaccaacgagaacgggccgcagttatgccctattatggcgcggtgtatcgtcttgaaattttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcctagaatggcgacaactctaggtcaagctacattgggtgagcacgtgggttgactagaagtcgtagaaaatgXmnIApaLIAmpRsource1,2401,2601,2801,3001,3201,3401,3601,3801,400
    tttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgttttttcccttattcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataataacttcgtaaatagtcccaataacagagtactcgcctatgtataaacttacataaatctttttaEarISspIAmpRAmpR promotersource1,4201,4401,4601,4801,5001,5201,5401,560
    aaacaaataggggttccgcgcacctgcaccagtcagtaaaacgacggccagtagtcaaaagcctccgaccggaggcttttgacttggtcaggtggagtgggagtagtcttcgccatcgcAGAGGCGTCGTCAACGCCCTCTCCCGATGAGATTGTGCGGGTTGACTTGGAGAGCGtttgtttatccccaaggcgcgtggacgtggtcagtcattttgctgccggtcatcagttttcggaggctggcctccgaaaactgaaccagtccacctcaccctcatcagaagcggtagcgTCTCCGCAGCAGTTGCGGGAGAGGGCTACTCTAACACGCCCAACTGAACCTCTCGCBsgIPaqCIPflFITth111IG3PDp_10597SS1G3PD_10597SS1Vector.FORtonB terminatorFragment.FORAmpR promoterSLiCE-revM13 fwdAarIsource1,5801,6001,6201,6401,6601,6801,7001,7201,740
    GGAGGGAGAGTCCGACGGGGACGGGGGTGAGGTGACACTTCGGTCCGGGGGTGAATGTCGCAGGAGCGATGACATCATGATGTGAATATCAGTCGGCAGGGCATGGCAAGTGCGTGTGTTATACTTGGTGTCTGTGCGGCAACCAGTGGAAGCTGACGACTGATGATGGTGTTTCCCTCCCTCTCAGGCTGCCCCTGCCCCCACTCCACTGTGAAGCCAGGCCCCCACTTACAGCGTCCTCGCTACTGTAGTACTACACTTATAGTCAGCCGTCCCGTACCGTTCACGCACACAATATGAACCACAGACACGCCGTTGGTCACCTTCGACTGCTGACTACTACCACAAAGRsrIIG3PDp_10597SS1G3PD_10597SS1Core_putativesource1,7601,7801,8001,8201,8401,8601,8801,9001,920
    AGATTTGGGTCCAGCCCGTGCCCTGTCATCCGAGGACCTGCGAATACTTCAACCTCATAGGTCGAATCCATGAGGACTGATGACAGGAGGTTTCCCGGATTTTGCGATTTGATGTGCCTCGGGTGGCACTCAGACACTCTAACGCTTATTCTCGGCCAGTGCTTTTATCACTATGTCTAAACCCAGGTCGGGCACGGGACAGTAGGCTCCTGGACGCTTATGAAGTTGGAGTATCCAGCTTAGGTACTCCTGACTACTGTCCTCCAAAGGGCCTAAAACGCTAAACTACACGGAGCCCACCGTGAGTCTGTGAGATTGCGAATAAGAGCCGGTCACGAAAATAGTGATACPpuMINmeAIIIG3PDp_10597SS1G3PD_10597SS1source1,9401,9601,9802,0002,0202,0402,0602,0802,100
    TAATGTGTGCGTTGTGTGTTGCCTGACTTGTTGTACAACCAGTATAGACTTCATCGATGTATGAACCAGGGTGTGACTATTCGCTTGGCTGGGCTCTTACTCTTTCTCAGTGGCAAGGTGCCTTCAAGAGCGGTTCCTTGCGGAGCACCACCTGAGCGGCCCTGCCCGGGTTCAGATTACACACGCAACACACAACGGACTGAACAACATGTTGGTCATATCTGAAGTAGCTACATACTTGGTCCCACACTGATAAGCGAACCGACCCGAGAATGAGAAAGAGTCACCGTTCCACGGAAGTTCTCGCCAAGGAACGCCTCGTGGTGGACTCGCCGGGACGGGCCCAAGTCSmaIXmaIBsrGITspMIG3PDp_10597SS1G3PD_10597SS1source2,1202,1402,1602,1802,2002,2202,2402,260
    GTTGAGCTTGCAGGCTAAACATCGATGTAGGGTTAATCAGATGTAGAATGCGGTCGCCTTCTGCCTTGCCCGTAGTGCAGGACTACGACTGCAGCACCCAACACGACTGTGGAATGGCGAGCAGCACAGGGCAGCTTCTAACCCATGGAGAGACAAGGGGATGGGCGCGCCAGTACAACTCGAACGTCCGATTTGTAGCTACATCCCAATTAGTCTACATCTTACGCCAGCGGAAGACGGAACGGGCATCACGTCCTGATGCTGACGTCGTGGGTTGTGCTGACACCTTACCGCTCGTCGTGTCCCGTCGAAGATTGGGTACCTCTCTGTTCCCCTACCCGCGCGGTCATAleIAscIBsgIBsmIBtgINcoIPstIXcmIBssHIIG3PDp_10597SS1G3PD_10597SS1source2,2802,3002,3202,3402,3602,3802,4002,4202,440
    AGCGCATATGCCATTATGGTCCACTGAGACTGACCGGTGTATCCACCAGGCTGTCTTTGTTGACAGATCTACCCGAACGCTCTCTGTGCGCCGGAGTCGGCGGCCGGCACGGAGCACTGGGCCGATTCCGTCAATATGACAAACCTCCTGCAATCGAGTCATGCACTGTGTGCTGTCGCGTATACGGTAATACCAGGTGACTCTGACTGGCCACATAGGTGGTCCGACAGAAACAACTGTCTAGATGGGCTTGCGAGAGACACGCGGCCTCAGCCGCCGGCCGTGCCTCGTGACCCGGCTAAGGCAGTTATACTGTTTGGAGGACGTTAGCTCAGTACGTGACACACGACAgeIBaeIEagINaeINdeIBglIIBstAPIDraIIINgoMIVG3PDp_10597SS1G3PD_10597SS1source2,4602,4802,5002,5202,5402,5602,5802,6002,620
    TGCATTGCGATCGAATCGGAGGCGTCTTCTCTTGTGTGCCTATAGGTTTGGTGAGTTTCCCTGTTCCAACGTAACATTCGTTTGTATTGCCTTCTGACCAAGCACCCAGAAGGAGGGGGAGGGGGAGGATGACATTTCGGCGTGTATCAATACGATTACGTTGCGACGGAGCTATACGTAACGCTAGCTTAGCCTCCGCAGAAGAGAACACACGGATATCCAAACCACTCAAAGGGACAAGGTTGCATTGTAAGCAAACATAACGGAAGACTGGTTCGTGGGTCTTCCTCCCCCTCCCCCTCCTACTGTAAAGCCGCACATAGTTATGCTAATGCAACGCTGCCTCGATAAjuIPvuIG3PDp_10597SS1G3PD_10597SS1source2,6402,6602,6802,7002,7202,7402,7602,7802,800
    TAGGACATGGTAATCTACACACCGAGCCCGAGCGGCCCGCGCTTACAGCGGACGAGAGGCCATAAAAGCATCGCTGGGTTTCGAAAGTTAGACCGAAGTCTCATCTCTGATCTTCATTTCCTCTTCATCTATTTCGACCTATACTAGTAACCCTAGTTTCCGCAATGCCCGTGAGATCCTGTACCATTAGATGTGTGGCTCGGGCTCGCCGGGCGCGAATGTCGCCTGCTCTCCGGTATTTTCGTAGCGACCCAAAGCTTTCAATCTGGCTTCAGAGTAGAGACTAGAAGTAAAGGAGAAGTAGATAAAGCTGGATATGATCATTGGGATCAAAGGCGTTACGGGCACTCBglIEarISpeIBstBIPshAIG3PD_10597SS1G3PDp_10597SS15'UTRsource2,8202,8402,8602,8802,9002,9202,9402,960
    TAGATGACTTCCGTTCCTCTTGCGGCGGATTGACCGTACTGGTACTTCTAGGTCAAAGTCGGAATTAACGGATGGTCAGCAGCGGGGAGGATATTTTCTCGGGACTCGTCCCCATTCTTATCGAACTGGAGGGCGACGTCAACGGGCACCGTTTCTCGGTCCGCGGCGAGGGATAATCTACTGAAGGCAAGGAGAACGCCGCCTAACTGGCATGACCATGAAGATCCAGTTTCAGCCTTAATTGCCTACCAGTCGTCGCCCCTCCTATAAAAGAGCCCTGAGCAGGGGTAAGAATAGCTTGACCTCCCGCTGCAGTTGCCCGTGGCAAAGAGCCAGGCGCCGCTCCCTATBarIBtgIZraIAatIIBsmBIEsp3IRsrIISacIIMV2SS4GE6DI8FS10GL12VP14IL16IE18LE20GD22VN24GH26RF28SV30RG32EG34Y3047-3769fuGFP_GLG3PD_10597SS1Intron_1Exon_2source2,9803,0003,0203,0403,0603,0803,1003,1203,140
    TGGAGACGCCTCCAACGGCAAGCTGGAGATCAAGTTCATCTGTACTACTGGCCGCCTCCCGGTCCCTTGGCCTACCCTTGTGACTACCCTGAGCTACGGGGTCCAGTGTTTCGCCAAGTACCCTGAGCACATGCGGCAGAACGACTTCTTCAAGTCCGCGATGCCGGACGGCTACACCTCTGCGGAGGTTGCCGTTCGACCTCTAGTTCAAGTAGACATGATGACCGGCGGAGGGCCAGGGAACCGGATGGGAACACTGATGGGACTCGATGCCCCAGGTCACAAAGCGGTTCATGGGACTCGTGTACGCCGTCTTGCTGAAGAAGTTCAGGCGCTACGGCCTGCCGATGAloINspIXcmIXmnIG36DA38SN40GK42LE44IK46FI48CT50TG52RL54PV56PW58PT60LV62TT64LS66YG68VQ70CF72AK74YP76EH78MR80QN82DF84FK86SA88MP90DG92Y3047-3769fuGFP_GLsource3,1603,1803,2003,2203,2403,2603,2803,3003,320
    GTCCAGGAGCGTACCATCTCCTTCAAGGAAGACGGAACCTACAAAACTCGCGCGGAGGTCAAATTCGAGGGGGAGGCCCTCGTGAACCGCATCGATCTCAAGGGGCTCGAGTTCAAAGAGGACGGGAACATTCTCGGACACAAGCTCGAATACTCGTTCAACTCGCACTACGTCTCAGGTCCTCGCATGGTAGAGGAAGTTCCTTCTGCCTTGGATGTTTTGAGCGCGCCTCCAGTTTAAGCTCCCCCTCCGGGAGCACTTGGCGTAGCTAGAGTTCCCCGAGCTCAAGTTTCTCCTGCCCTTGTAAGAGCCTGTGTTCGAGCTTATGAGCAAGTTGAGCGTGATGCAGATliIXhoIPspXIPaeR7IV94QE96RT98IS100FK102ED104GT106YK108TR110AE112VK114FE116GE118AL120VN122RI124DL126KG128LE130FK132ED134GN136IL138GH140KL142EY144SF146NS148HY150V3047-3769fuGFP_GLsource3,3403,3603,3803,4003,4203,4403,4603,4803,500
    ATATCACCGCCGACAAGAACCGCAATGGGCTCGAAGCGCAGTTCCGCATCCGCCACAACGTGGACGACGGTTCGGTCCAACTTGCCGACCACTACCAGCAGAACACGCCCATCGGCGAGGGGCCGGTCCTTCTGCCTGAACAGCACTACCTCACGACGAACTCCGTGCTCTCCAATATAGTGGCGGCTGTTCTTGGCGTTACCCGAGCTTCGCGTCAAGGCGTAGGCGGTGTTGCACCTGCTGCCAAGCCAGGTTGAACGGCTGGTGATGGTCGTCTTGTGCGGGTAGCCGCTCCCCGGCCAGGAAGACGGACTTGTCGTGATGGAGTGCTGCTTGAGGCACGAGAGGTTPflMIDraIIIY152IT154AD156KN158RN160GL162EA164QF166RI168RH170NV172DD174GS176VQ178LA180DH182YQ184QN186TP188IG190EG192PV194LL196PE198QH200YL202TT204NS206VL208SK2103047-3769fuGFP_GLsource3,5203,5403,5603,5803,6003,6203,6403,660
    GGATCCTCAGGAGCGCCGCGATCATATGGTCCTTGTGGAATTCGTCACGGCGGCGGGCCTGTCCCTTGGCATGGACGAGCTTTACAAGTCCTGAGTAGAGGCAGATTGCAAGGTCTTGCTTTGTGCCCAGTGGCCTGAAGGTATCTATGAACTGTAAATAATTCTATCACATAGACCTAGGAGTCCTCGCGGCGCTAGTATACCAGGAACACCTTAAGCAGTGCCGCCGCCCGGACAGGGAACCGTACCTGCTCGAAATGTTCAGGACTCATCTCCGTCTAACGTTCCAGAACGAAACACGGGTCACCGGACTTCCATAGATACTTGACATTTATTAAGATAGTGTATCTNdeIBamHIEcoRIHaeIIBsu36IDP212QE214RR216DH218MV220LV222EF224VT226AA228GL230SL232GM234DE236LY238KS240*3047-3769fuGFP_GLG3PD_10597SS13'UTRsource3,6803,7003,7203,7403,7603,7803,8003,8203,840
    CCTCAATAGATTTCATCATCTGAACTCCAGCCTCTATGGATATGCGGGTAAGTACTCACTGAGCAACAGTCCAATAACTCGACGTACTACGCAGACATGGCTGATCACGCAAACCGGAGGTACATACTTAAATAAAACGTTAAAGGCATGAGTCGGACGAACAGTCCGGCCTTTGGGAGTTATCTAAAGTAGTAGACTTGAGGTCGGAGATACCTATACGCCCATTCATGAGTGACTCGTTGTCAGGTTATTGAGCTGCATGATGCGTCTGTACCGACTAGTGCGTTTGGCCTCCATGTATGAATTTATTTTGCAATTTCCGTACTCAGCCTGCTTGTCAGGCCGGAAACAhdIBclIScaIG3PD_10597SS1Terminator_polyA_putativesource3,8603,8803,9003,9203,9403,9603,9804,0004,020
    GGTTACGCTCACAACAGCGATACCCCCAATCTTGAAAGCTCCTACTACAGGGATCGATCACATTGATGATCGCCGCTTCAACGAGGCCTTCCACAGGAAGCACAGTTTGCTTCGGGCCATATCAACGCATGAATACGGATTCAAATTAGTGTACAATTAAAGTAATTTAAAGGGTCCAATGCGAGTGTTGTCGCTATGGGGGTTAGAACTTTCGAGGATGATGTCCCTAGCTAGTGTAACTACTAGCGGCGAAGTTGCTCCGGAAGGTGTCCTTCGTGTCAAACGAAGCCCGGTATAGTTGCGTACTTATGCCTAAGTTTAATCACATGTTAATTTCATTAAATTTCCCAStuIBsrGIEcoNIEcoNIBstAPIG3PD_10597SS1Terminator_polyA_putativesource4,0404,0604,0804,1004,1204,1404,1604,1804,200
    ATCGTTCATATATCCTGGAAATCTTCATTGGTCATGCCGGATTGCTCTGGAGGAGGGGAACACTATGCGGCTGAGAACGCCATTGTACTTCACTAATCTCCGATGGCCAACGATTTCGAGCTTGGAGCAGTTCTGGGTCCCGGATGTTGAGCACAAGGCGGGTGATTAGTGAGCTTAGCAAGTATATAGGACCTTTAGAAGTAACCAGTACGGCCTAACGAGACCTCCTCCCCTTGTGATACGCCGACTCTTGCGGTAACATGAAGTGATTAGAGGCTACCGGTTGCTAAAGCTCGAACCTCGTCAAGACCCAGGGCCTACAACTCGTGTTCCGCCCACTAATCACTCGAAjuIKflIMscIBseRIPpuMIEco53kIG3PD_10597SS1Terminator_polyA_putativesource4,2204,2404,2604,2804,3004,3204,3404,360
    CGCGATTgcgatgttgaagaccacgctgaggtgtcaatcgtcggagccgctgagcaataactagcataaccccttggggcctctaaacgggtcttgaggggttttttgcatggtcatagctgtttcctgagagcttggcaggtgatgacacacattaacaaatttcgtgaggagtGCGCTAAcgctacaacttctggtgcgactccacagttagcagcctcggcgactcgttattgatcgtattggggaaccccggagatttgcccagaactccccaaaaaacgtaccagtatcgacaaaggactctcgaaccgtccactactgtgtgtaattgtttaaagcactcctcaBlpINruISacIBbvCIPaqCIT7 terminatorFragment.REVVector.REVspacerM13 revSLiCE-forT7 ReverseAarINew...rtsource4,3804,4004,4204,4404,4604,4804,5004,5204,540
    ctccagaagaatgccattaatttccataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccgggaggtcttcttacggtaattaaaggtatccgaggcggggggactgctcgtagtgtttttagctgcgagttcagtctccaccgctttgggctgtcctgatatttctatggtccgcaaagggggaccttcgagggagcacgcgagaggacaaggctgggacggcgaatggccAseIBsmIBseRIspacerorisource4,5604,5804,6004,6204,6404,6604,6804,7004,720
    • Plasmid
    • Relevant Items
    • Metadata
    • Description
    • Linear Map
    Editing disabled on read-only sequence.
    4720 bp350037504000425045002505007501000AmpRfuGFP_GLBB seq REVpOpen ori anneal REVSLiCE-forBioBrick suffixT7 Reversesourceori3047-3769F_G3PDp_105971SS1 (DNA)F_g3pdp_popen (DNA)f_fuGFP_g3pdp (DNA)R_G3PDt_pCbxOH (DNA)R_G3PDt_10597SS1 (DNA)M13 rev (DNA)

    Welcome to Benchling!

    Sign in to view data.

    New digest

    Saved digests

    Enzyme AatII
    Enzyme lists
    Cut sites visible on maps
    Find enzyme
    Clear selected
    Name Cuts
    Selected Color
    Show enzymes that cut

    Primers

    Pairs

    Create Primers
    Attach Existing
    Detach All Primers
    Primer Position Product Size

    History

    Lineage

     Show Full History
    Change User Timestamp

    Sequence Alignments

    Create New Alignment
    Saved Alignments

    Sequence Info

    Tags

    Name
    Parent Version
    Folder
    Topology
    Start Index
    Locked
    Created
    --
    Length
    --
    Export Data
    Download
    Split Workspace
    Bases
    4720