Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
pZCS16 (eft-3p::wrmScarlet::tbb-2UTR in pUC19)
  • Sequence Map
Editing disabled on read-only sequence.
atctcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactagagtactggttttagggaattgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctagaagaactctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcgatggtcgccaccaaacaaacggcctagttctcgatggttgori20406080100120140160
tctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgttcttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggagaaaaaggcttccattgaccgaagtcgtctcgcgtctatggtttatgacaagaagatcacatcggcatcaatccggtggtgaagttcttgagacatcgtggcggatgtatggagcgagacgattaggacaatggtcaccgacgacggtcaccgctattcagcacagaatggcccAcuIMmeIAlwNIori180200220240260280300320340
ttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggtaaaacctgagttctgctatcaatggcctattccgcgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgctggatgtggcttgactctatggatgtcgcactcgatactctttcgcggtgcgaagggcttccctctttccgcctgtccataggccattMmeIori360380400420440460480500520
gcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctcgccgtcccagccttgtcctctcgcgtgctccctcgaaggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagactgaactcgcagctaaaaacactacgagcagtccccccgcctcggatacctttttgcggtcgttgcgccggaaaaatgccaaggaBciVIoripBR322ori-F540560580600620640660680700
ggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctcccggaaaacgaccggaaaacgagtgtacaagaaaggacgcaataggggactaagacacctattggcataatggcggaaactcactcgactatggcgagcggcgtcggcttgctggctcgcgtcgctcagtcactcgctccttcgccttctcgcgggttatgcgtttggcggagagPciISapIBspQIAflIII720740760780800820840860
cccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcgggcgcgcaaccggctaagtaattacgtcgaccgtgctgtccaaagggctgacctttcgcccgtcactcgcgttgcgttaattacactcaatcgagtgagtaatccgtggggtccgaaatgtgaaatacgaaggccgagcatacaacacaccttaacactcgcctattgttaaagPvuIIlac promoterCAP binding sitelac operator8809009209409609801,0001,0201,040
acacaggaaacagctatgaccatgattacgccaagcttgcatgcctgcaggtcgactctagaggatcccGCACCTTTGGTCTTTTATTGTCAACTTCCATTGGTTCTTCCATTGTTTCTGTTAAATTAATGAATTTTTCATAAAATAAAGACATTATACAATATAAAAATGAAGAtgtgtcctttgtcgatactggtactaatgcggttcgaacgtacggacgtccagctgagatctcctagggCGTGGAAACCAGAAAATAACAGTTGAAGGTAACCAAGAAGGTAACAAAGACAATTTAATTACTTAAAAAGTATTTTATTTCTGTAATATGTTATATTTTTACTTCTAccIPstISalISbfISphIXbaIBfuAIBspMIHindIIIpEFT-3 promoterM13 ReverseM13 rev1,0601,0801,1001,1201,1401,1601,1801,2001,220
ATTTATTGAAAATAAACTGCCAGAGAGAAAAAGTATGCAACACTCCCGCCGAGAGTGTTTGAAATGGTGTACGGTACATTTTCGTGCTAGGAGTTAGATGTGCAGGCAGCAACGAGAGGGGGAGAGATTTTTTTGGGCCTTGTGAAATTAACGTGAGTTTTCTGGTCATCTGACTTAAATAACTTTTATTTGACGGTCTCTCTTTTTCATACGTTGTGAGGGCGGCTCTCACAAACTTTACCACATGCCATGTAAAAGCACGATCCTCAATCTACACGTCCGTCGTTGCTCTCCCCCTCTCTAAAAAAACCCGGAACACTTTAATTGCACTCAAAAGACCAGTAGACTGABsgINmeAIIIpEFT-3 promoter1,2401,2601,2801,3001,3201,3401,3601,3801,400
AATCATGTTGGTTTTTTGTTGGTTTATTTTGTTTTTATCTTTGTTTTTATCCAGATTAGGAAATTTAAATTTTATGAATTTATAATGAGGTCAAACATTCAGTCCCAGCGTTTTTCCTGTTCTCACTGTTTAGTCGAATTTTTATTTTAGGCTTTCAACAAATGTTCTAACTGTCTTAGTACAACCAAAAAACAACCAAATAAAACAAAAATAGAAACAAAAATAGGTCTAATCCTTTAAATTTAAAATACTTAAATATTACTCCAGTTTGTAAGTCAGGGTCGCAAAAAGGACAAGAGTGACAAATCAGCTTAAAAATAAAATCCGAAAGTTGTTTACAAGATTGACAGPsiISwaIpEFT-3 promoter1,4201,4401,4601,4801,5001,5201,5401,560
TTATTTGTGACCTCACTTTTTATATTTTTTTAATTTTTAAAAATATTAGAAGTTTCTAGGATAATTTTTTCGACTTTTATTCTCTCTACCGTCCGCACTCTTCTTACTTTTAAATTAAATTGTTTTTTTTTCAGTTGGGAAACACTTTGCTCTAGAaaaaATGGTCAGCAAGGGAAATAAACACTGGAGTGAAAAATATAAAAAAATTAAAAATTTTTATAATCTTCAAAGATCCTATTAAAAAAGCTGAAAATAAGAGAGATGGCAGGCGTGAGAAGAATGAAAATTTAATTTAACAAAAAAAAAGTCAACCCTTTGTGAAACGAGATCTttttTACCAGTCGTTCCCTXbaIMV2SK4G1736-2434pEFT-3 promoterwrmScarlet1,5801,6001,6201,6401,6601,6801,7001,7201,740
GAGGCAGTTATCAAGGAGTTCATGCGTTTCAAGGTCCACATGGAGGGATCCATGAACGGACACGAGTTCGAGATCGAGGGAGAGGGAGAGGGACGTCCATACGAGGGAACCCAAACCGCCAAGCTCAAGGTCACCAAGGGAGGACCACTCCCATTCTCCTGGGACATCCTCTCCCCTCCGTCAATAGTTCCTCAAGTACGCAAAGTTCCAGGTGTACCTCCCTAGGTACTTGCCTGTGCTCAAGCTCTAGCTCCCTCTCCCTCTCCCTGCAGGTATGCTCCCTTGGGTTTGGCGGTTCGAGTTCCAGTGGTTCCCTCCTGGTGAGGGTAAGAGGACCCTGTAGGAGAGGGBplIBplIStyIBstXIBstEIIE6AV8IK10EF12MR14FK16VH18ME20GS22MN24GH26EF28EI30EG32EG34EG36RP38YE40GT42QT44AK46LK48VT50KG52GP54LP56FS58WD60IL62S1736-2434wrmScarlet1,7601,7801,8001,8201,8401,8601,8801,9001,920
CACAATTCATGTACGGATCCCGTGCCTTCACCAAGCACCCAGCCGACATCCCAGACTACTACAAGCAATCCTTCCCAGAGGGATTCAAGTGGGAGCGTGTCATGAACTTCGAGGACGGAGGAGCCGTCACCGTCACCCAAGACACCTCCCTCGAGGACGGAACCCTCATCTACAAGTGTTAAGTACATGCCTAGGGCACGGAAGTGGTTCGTGGGTCGGCTGTAGGGTCTGATGATGTTCGTTAGGAAGGGTCTCCCTAAGTTCACCCTCGCACAGTACTTGAAGCTCCTGCCTCCTCGGCAGTGGCAGTGGGTTCTGTGGAGGGAGCTCCTGCCTTGGGAGTAGATGTTAvaITliIXhoIBseRIBsoBICspCIPspXIPaeR7IP64QF66MY68GS70RA72FT74KH76PA78DI80PD82YY84KQ86SF88PE90GF92KW94ER96VM98NF100ED102GG104AV106TV108TQ110DT112SL114ED116GT118LI120YK1221736-2434wrmScarlet1,9401,9601,9802,0002,0202,0402,0602,0802,100
GGTCAAGCTCCGTGGAACCAACTTCCCACCAGACGGACCAGTCATGCAAAAGAAGACCATGGGATGGGAGGCCTCCACCGAGCGTCTCTACCCAGAGGACGGAGTCCTCAAGGGAGACATCAAGATGGCCCTCCGTCTCAAGGACGGAGGACGTTACCTCGCCGACTTCAAGACCCCAGTTCGAGGCACCTTGGTTGAAGGGTGGTCTGCCTGGTCAGTACGTTTTCTTCTGGTACCCTACCCTCCGGAGGTGGCTCGCAGAGATGGGTCTCCTGCCTCAGGAGTTCCCTCTGTAGTTCTACCGGGAGGCAGAGTTCCTGCCTCCTGCAATGGAGCGGCTGAAGTTCTGGBbsIBtgIBtgINcoIStuIStyIPflFIPflMITth111IVK124LR126GT128NF130PP132DG134PV136MQ138KK140TM142GW144EA146ST148ER150LY152PE154DG156VL158KG160DI162KM164AL166RL168KD170GG172RY174LA176DF178KT1801736-2434wrmScarlet2,1202,1402,1602,1802,2002,2202,2402,260
ACCTACAAGGCCAAGAAGCCAGTCCAAATGCCAGGAGCCTACAACGTCGACCGTAAGCTCGACATCACCTCCCACAACGAGGACTACACCGTCGTCGAGCAATACGAGCGTTCCGAGGGACGTCACTCCACCGGAGGAATGGACGAGCTCTACAAGTAAACTAGTgataaatgcaTGGATGTTCCGGTTCTTCGGTCAGGTTTACGGTCCTCGGATGTTGCAGCTGGCATTCGAGCTGTAGTGGAGGGTGTTGCTCCTGATGTGGCAGCAGCTCGTTATGCTCGCAAGGCTCCCTGCAGTGAGGTGGCCTCCTTACCTGCTCGAGATGTTCATTTGATCActatttacgtAccISacISalISpeIXcmIBanIIEco53kITY182KA184KK186PV188QM190PG192AY194NV196DR198KL200DI202TS204HN206ED208YT210VV212EQ214YE216RS218EG220RH222ST224GG226MD228EL230YK232*1736-2434wrmScarlettb...R2,2802,3002,3202,3402,3602,3802,4002,4202,440
aaatcctttcaagcattcccttcttctctatcactcttctttctttttgtcaaaaaattctctcgctaatttatttgcttttttaatgttattattttatgactttttatagtcactgaaaagtttgcatctgagtgaagtgaatgctatcaaaatgtgattctgtctgatgtactttaggaaagttcgtaagggaagaagagatagtgagaagaaagaaaaacagttttttaagagagcgattaaataaacgaaaaaattacaataataaaatactgaaaaatatcagtgacttttcaaacgtagactcacttcacttacgatagttttacactaagacagactacatgBsmIBsmItbb-2 3'UTR2,4602,4802,5002,5202,5402,5602,5802,6002,620
tttcacaatctctcttcaattccattttgaagtgctttaaacccgaaaggttgagaaaaatgcgagcgctcaaatatttgtattgtgttcgttgagtgacccaacaaaaagaggaaactttattgtgccgccaagaaaaaagtctcacgggtaccgagctcgaattcactggccgaaagtgttagagagaagttaaggtaaaacttcacgaaatttgggctttccaactctttttacgctcgcgagtttataaacataacacaagcaactcactgggttgtttttctcctttgaaataacacggcggttcttttttcagagtgcccatggctcgagcttaagtgaccggcAfeIKpnISacIBanIIEcoRIAcc65IEco53kItbb-2 3'UTR2,6402,6602,6802,7002,7202,7402,7602,7802,800
tcgttttacaacgtcgtgactgggaaaaccctggcgttacccaacttaatcgccttgcagcacatccccctttcgccagctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacagcaaaatgttgcagcactgacccttttgggaccgcaatgggttgaattagcggaacgtcgtgtagggggaaagcggtcgaccgcattatcgcttctccgggcgtggctagcgggaagggttgtcaacgcgtcggacttaccgcttaccgcggactacgccataaaagaggaatgBglIBmrIFspIKasINarIPvuISfoIPluTIPvuII2,8202,8402,8602,8802,9002,9202,9402,960
gcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcatgcgtagacacgccataaagtgtggcgtataccacgtgagagtcatgttagacgagactacggcgtatcaattcggtcggggctgtgggcggttgtgggcgactgcgcgggactgcccgaacagacgagggccgtaggcgaatgtctgttcgacactggcagaggccctcgacgtacNdeIPfoIBstAPIpRS-markerpGEX 3'2,9803,0003,0203,0403,0603,0803,1003,1203,140
tgtcagaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaataacagtctccaaaagtggcagtagtggctttgcgcgctctgctttcccggagcactatgcggataaaaatatccaattacagtactattattaccaaagaatctgcagtccaccgtgaaaagcccctttacacgcgccttggggataaacaaataaaaagatttatgtaagtttatEcoO109IAmpR promoterpBRforEco3,1603,1803,2003,2203,2403,2603,2803,3003,320
tgtatccgctcatgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttacataggcgagtactctgttattgggactatttacgaagttattataactttttccttctcatactcataagttgtaaaggcacagcgggaataagggaaaaaacgccgtaaaacggaaggacaaaaacgagtgggtctttgcgaccactttcattttctacgacttctagtcaaBciVIAmpRAmpR promoter3,3403,3603,3803,4003,4203,4403,4603,4803,500
gggtgcacgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcccacgtgctcacccaatgtagcttgacctagagttgtcgccattctaggaactctcaaaagcggggcttcttgcaaaaggttactactcgtgaaaatttcaagacgatacaccgcgccataatagggcataactgcggcccgttctcgttgagccagcggcgtatgtgataagaAclIAcuIBcgIXmnIAmpRAmp-R3,5203,5403,5603,5803,6003,6203,6403,660
cagaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccgaaggagctaaccgcttttttgcacaacatggggggtcttactgaaccaactcatgagtggtcagtgtcttttcgtagaatgcctaccgtactgtcattctcttaatacgtcacgacggtattggtactcactattgtgacgccggttgaatgaagactgttgctagcctcctggcttcctcgattggcgaaaaaacgtgttgtacccccPvuIScaIAmpR3,6803,7003,7203,7403,7603,7803,8003,8203,840
atcatgtaactcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggcaacaattaatagactggatggaggcggataatagtacattgagcggaactagcaacccttggcctcgacttacttcggtatggtttgctgctcgcactgtggtgctacggacatcgttaccgttgttgcaacgcgtttgataattgaccgcttgatgaatgagatcgaagggccgttgttaattatctgacctacctccgcctattAclIFspIBsrDIAmpR3,8603,8803,9003,9203,9403,9603,9804,0004,020
agttgcaggaccacttctgcgctcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacggggagtcaggcaactatggatgaacgatcaacgtcctggtgaagacgcgagccgggaaggccgaccgaccaaataacgactatttagacctcggccactcgcacccagagcgccatagtaacgtcgtgaccccggtctaccattcgggagggcatagcatcaatagatgtgctgcccctcagtccgttgatacctacttgctAhdIBglIBmrIBpmIBsaIBsrDIBsrFINmeAIIIAmpR4,0404,0604,0804,1004,1204,1404,1604,1804,200
aatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgatattatctgtctagcgactctatccacggagtgactaattcgtaaccattgacagtctggttcaaatgagtatatatgaaatctaactaaattttgaagtaaaaattaaattttcctagatccacttctaggaaaaactatAmpR4,2204,2404,2604,2804,3004,320
  • Plasmid
Editing disabled on read-only sequence.
4339 bp32503500375040002505007501000M13 ReverseM13 revAmpRAmp-RoriZCS231 (DNA)ZCS241 (DNA)ZCS249 (DNA)ZCS238 (DNA)ZCS271 (DNA)MS218 (DNA)MS245 (DNA)MS785 (DNA)ZCS157 (DNA)ZCS235 (DNA)ZCS237 (DNA)ZCS150 (DNA)MS120 (DNA)M13F (DNA)MS595 (DNA)

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

History

Lineage

 Show Full History
Change User Timestamp

Sequence Alignments

Saved Alignments

Sequence Info

Tags

Name
Parent Version
Folder
Topology
Start Index
Locked
Created
--
Length
--
Export Data
Split Workspace
Bases
4339