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Here's a sample experiment to show you how notebook entries work.
Use tables with formulas to make a master mix calculation. Edit the number of reactions to see it in action!
Sunday, 8/4/2024
Insert new days to organize your entry (and see it on the Home calendar). Use checkboxes to plan out your day:
Combine above reaction in tube
Incubate at 37°C for an hour
Run gel
Extract band and save
Monday, 8/5/2024
Link to other Benchling files by dragging them in from the file browser at the left. Or use the @-symbol to insert a link to another Benchling file.
Tuesday, 8/6/2024
Drag and drop an image from your desktop to view it inline and take notes about it:
pAS329_ligation_check.png
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Lane 1: DNA ladder
Lane 2: undigested
Lane 3: digested vector
Lane 4: insert DNA
Lane 5: ligation tube
Wednesday, 8/7/2024
Insert code blocks to keep your scripts right next to your notes and results.
def calculate_score(input_bases, matched_bases):
mismatches = []
for i, (b, ob) in enumerate(zip(input_bases, matched_bases)):
if b != ob:
mismatches.append(i)
Cut sites of enzymes that you select are highlighted to help guide your work.
(Enzymes with compatible ends turn the same color.)
Selecting cut sites and copying the sequence will also activate enzymes.
See the "Cloning by restriction enzyme digest" tutorial under Sequence Construction in Help for more information.