Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
pJ02B2Rm_EF(A)
  • Sequence Map
Editing is disabled because sequence edits have been locked.
GCTTttgacagctagctcagtcctaggtactgtgctagcTACTgggcccaagttcacttaaaaaggagatcaacaatgaaagcaattttcgtactgaaacatcttaatcatgctaaggaggttttctAATGatggcttcctccgaggatgttatcaaagagttcatgcgtttcaaCGAAaactgtcgatcgagtcaggatccatgacacgatcgATGAcccgggttcaagtgaatttttcctctagttgttactttcgttaaaagcatgactttgtagaattagtacgattcctccaaaagaTTACtaccgaaggaggctcctacaatagtttctcaagtacgcaaagttApaIBmtIBmtIBsaINheINheIStyIAvrIIBanIIPspOMIBCD2E1010mJ2310220406080100120140160
agttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaaggtgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactgaaagttaccaaaggtggtccgctgccgttcgcttgggacatcctgtccccgcagttccagtacggttccaaagcttacgtttcaagcataccttccaaggcaattgccagtgctcaagctttagcttccacttccacttccagcaggcatgcttccatgggtctggcgatttgactttcaatggtttccaccaggcgacggcaagcgaaccctgtaggacaggggcgtcaaggtcatgccaaggtttcgaatgcaaAhdIBaeIFauIHpaIKpnIPsrIBceAIBsiWIBsmFIBsmFIBstBIAcc65IHincIIHindIIIE1010m180200220240260280300320340
aaacacccggctgacatcccggactacctgaaactgtccttcccggaaggtttcaaatgggaacgtgttatgaacttcgaagatggtggtgttgttaccgttacccaggactcctccctgcaagacggtgagttcatctacaaagttaaactgcgtggtaccaacttcccgtccgtttgtgggccgactgtagggcctgatggactttgacaggaagggccttccaaagtttacccttgcacaatacttgaagcttctaccaccacaacaatggcaatgggtcctgaggagggacgttctgccactcaagtagatgtttcaatttgacgcaccatggttgaagggcaggcKpnIPfoIPfoIBseRIBstBIAcc65IAflIIIE1010m360380400420440460480500520
acggtccggttatgcagaaaaaaaccatgggttgggaagcttccaccgaacgtatgtacccggaggatggtgctctgaaaggtgaaatcaaaatgcgtctgaaactgaaagacggtggtcactacgacgctgaagttaaaaccacctacatggctaaaaaaccggttcagctgcctgccaggccaatacgtctttttttggtacccaacccttcgaaggtggcttgcatacatgggcctcctaccacgagactttccactttagttttacgcagactttgactttctgccaccagtgatgctgcgacttcaattttggtggatgtaccgattttttggccaagtcgacggAgeIBaeIBtgINcoIStyIBstXIPflMIPshAIPvuIIRsrIIHindIIIE1010m540560580600620640660680700
gggtgcttacaaaaccgacatcaaactggacatcacctcccacaacgaggactacaccatcgttgaacagtacgaacgtgctgaaggtcgtcactccaccggtgcttaataaAGGTccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgtcccacgaatgttttggctgtagtttgacctgtagtggagggtgttgctcctgatgtggtagcaacttgtcatgcttgcacgacttccagcagtgaggtggccacgaattattTCCAggtccgtagtttattttgctttccgagtcagctttctgacccggaaagcaaaatagacaAgeIBsaXISgrAIE1010mB0015720740760780800820840860
tgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttataCGCTagagacctactagtagcggccgctgcaggcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggacaaacagccacttgcgagagatgatctcagtgtgaccgagtggaagcccacccggaaagacgcaaatatGCGAtctctggatgatcatcgccggcgacgtccgaaggagcgagtgactgagcgacgcgagccagcaagccgacgccgctcgccatagtcgagtgagtttccgccBsaIEagINotIPsrIPstISpeIBsrBIB00158809009209409609801,0001,0201,040
taatacggttatccacagaatcaggggataacgcaggaaagaacatgtgagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttccacaggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacattatgccaataggtgtcttagtcccctattgcgtcctttcttgtacactcgttttccggtcgttttccggtccttggcatttttccggcgcaacgaccgcaaaaaggtgtccgaggcggggggactgctcgtagtgtttttagctgcgagttcagtctccaccgctttgggctgDrdINspIPciITfiIAflIII1,0601,0801,1001,1201,1401,1601,1801,2001,220
aggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtggcgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagctgtcctgatatttctatggtccgcaaagggggaccttcgagggagcacgcgagaggacaaggctgggacggcgaatggcctatggacaggcggaaagagggaagcccttcgcaccgcgaaagagtatcgagtgcgacatccatagagtcaagccacatccagcaagcgaggttcgacBciVIBseYIHaeII1,2401,2601,2801,3001,3201,3401,3601,3801,400
ggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaccgacacacgtgcttggggggcaagtcgggctggcgacgcggaataggccattgatagcagaactcaggttgggccattctgtgctgaatagcggtgaccgtcgtcggtgaccattgtcctaatcgtctcgctccatacatccgccacgatgtctcaagaacttcaccaccggatAlwNIApaLI1,4201,4401,4601,4801,5001,5201,5401,560
actacggctacactagaagaacagtatttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctgatgccgatgtgatcttcttgtcataaaccatagacgcgagacgacttcggtcaatggaagcctttttctcaaccatcgagaactaggccgtttgtttggtggcgaccatcgccaccaaaaaaacaaacgttcgtcgtctaatgcgcgtctttttttcctagagttcttctaggBceAI1,5801,6001,6201,6401,6601,6801,7001,7201,740
tttgatcttttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaaaactagaaaagatgccccagactgcgagtcaccttgcttttgagtgcaattccctaaaaccagtactctaatagtttttcctagaagtggatctaggaaaatttaatttttacttcaaaatttagttagatttcatatatactcatttgaaccagactgtcaatggttacgaatbla1,7601,7801,8001,8201,8401,8601,8801,9001,920
atcagtgaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgcgacccacgctcaccggctccagatttatcagcaataaaccagccagtagtcactccgtggatagagtcgctagacagataaagcaagtaggtatcaacggactgaggggcagcacatctattgatgctatgccctcccgaatggtagaccggggtcacgacgttactatggcgcgctgggtgcgagtggccgaggtctaaatagtcgttatttggtcggtcAhdIBpmIBsrDIbla1,9401,9601,9802,0002,0202,0402,0602,0802,100
ccggaagggccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagctagagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggtatggcttcattcagggccttcccggctcgcgtcttcaccaggacgttgaaataggcggaggtaggtcagataattaacaacggcccttcgatctcattcatcaagcggtcaattatcaaacgcgttgcaacaacggtaacgatgtccgtagcaccacagtgcgagcagcaaaccataccgaagtaagtcAclIAseIBglIFspIBsrDINmeAIIIbla2,1202,1402,1602,1802,2002,2202,2402,260
ctccggttcccaacgatcaaggcgagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaagatgctttgaggccaagggttgctagttccgctcaatgtactagggggtacaacacgttttttcgccaatcgaggaagccaggaggctagcaacagtcttcattcaaccggcgtcacaatagtgagtaccaataccgtcgtgacgtattaagagaatgacagtacggtaggcattctacgaaaBtsIBtsIPvuIBtsαIBtsαIbla2,2802,3002,3202,3402,3602,3802,4002,4202,440
tctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgctgtagacactgaccactcatgagttggttcagtaagactcttatcacatacgccgctggctcaacgagaacgggccgcagttatgccctattatggcgcggtgtatcgtcttgaaattttcacgagtagtaaccttttgcaagaagccccgcttttgagagttcctagaatggcgacaAclIBcgIScaITatIXmnIBsaHIbla2,4602,4802,5002,5202,5402,5602,5802,6002,620
tgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatattattgaagactctaggtcaagctacattgggtgagcacgtgggttgactagaagtcgtagaaaatgaaagtggtcgcaaagacccactcgtttttgtccttccgttttacggcgttttttcccttattcccgctgtgcctttacaacttatgagtatgagaaggaaaaagttataataacttcEarISspIApaLIbla2,6402,6602,6802,7002,7202,7402,7602,7802,800
catttatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgccacctgacgtctaagaaaccattattatcatgacattaacctataaaaataggcgtatcacgaggcagaatttcagagtaaatagtcccaataacagagtactcgcctatgtataaacttacataaatctttttatttgtttatccccaaggcgcgtgtaaaggggcttttcacggtggactgcagattctttggtaataatagtactgtaattggatatttttatccgcatagtgctccgtcttaaagtctApoIZraIAatIIBciVIBsaHIBsrBI2,8202,8402,8602,8802,9002,9202,9402,960
taaaaaaaatccttagctttcgctaaggatgatttctggaattcgcggccgcttctagagactagtgggtctcaattttttttaggaatcgaaagcgattcctactaaagaccttaagcgccggcgaagatctctgatcacccagagtApoIDrdIEagINotISpeIXbaIEcoRI2,9803,0003,0203,040
  • Plasmid
Editing is disabled because sequence edits have been locked.
3049 bp225025002750250500750blaE1010mJ23102,BCD2,BsaI,NheI,BmtI,AvrII,StyI,NheI,BmtI,PspOMI,ApaI,BanIIHincII,HpaI,PsrI,BstBI,BaeI,BsiWI,Acc65I,KpnI,BceAI,BsmFI,AhdI,BsmFIFauI,HindIII,PfoI,PfoI,AflIIIBstBI,BseRIAcc65IKpnI,RsrII,BtgI,NcoI,StyI,PflMI,HindIII,BaeIPshAI,BstXI,AgeI,PvuIIBsaXIPvuI,BtsI,BtsαI,BtsI,BtsαITatI,ScaIBcgI,BsaHIAclI,XmnIApaLIEarI,SspI,BciVI,BsrBIBsaHI,ZraI,AatII,ApoI,ApoI,EcoRI,EagI,NotI,XbaI,SpeI,DrdI

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

Version history

 Show full history
Change User Timestamp

Sequence Alignments

Saved alignments

Sequence Info

Tags

Name
Parent version
Folder
Topology
Start index
Locked
Created
--
Length
--
Export data
Split Workspace
Bases
3049