Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
pWS178 [o]
  • Sequence Map
Editing disabled on read-only sequence.
gcggccgcccctgaattcgcatctagactgaactggccgataattgcagacgaacgaagaggatgtccaatattttttttaaggaataaggatacttcaagactagattcccccctgcattcccatcagaaccgtaaaccttggcgctttccttgggaagtattcaagaagtgcccgccggcggggacttaagcgtagatctgacttgaccggctattaacgtctgcttgcttctcctacaggttataaaaaaaattccttattcctatgaagttctgatctaaggggggacgtaagggtagtcttggcatttggaaccgcgaaaggaacccttcataagttcttcacggEagINotIXbaIEcoRIScRPL18B PromoterConS scar20406080100120140160
ttgtccggtttctgtggctcacaaaccagcgcgcccgatatggctttcttttcacttatgaatgtaccagtacgggacaattagaacgctcctgtaacaatctctttgcaaatgtggggttacattctaaccatgtcacactgctgacgaaattcaaagtaaaaaaaaatgggacaacaggccaaagacaccgagtgtttggtcgcgcgggctataccgaaagaaaagtgaatacttacatggtcatgccctgttaatcttgcgaggacattgttagagaaacgtttacaccccaatgtaagattggtacagtgtgacgactgctttaagtttcatttttttttaccctgScRPL18B Promoter180200220240260280300320340
cacgtcttgagaacgatagattttctttattttacattgaacagtcgttgtctcagcgcgctttatgttttcattcatacttcatattataaaataacaaaagaagaatttcatattcacgcccaagaaatcaggctgctttccaaatgcaattgacacttcattagccatcacagtgcagaactcttgctatctaaaagaaataaaatgtaacttgtcagcaacagagtcgcgcgaaatacaaaagtaagtatgaagtataatattttattgttttcttcttaaagtataagtgcgggttctttagtccgacgaaaggtttacgttaactgtgaagtaatcggtagtgtPsiIPflFITth111IScRPL18B Promoter360380400420440460480500520
caaaactctttcttgctggagcttcttttaaaaaagacctcagtacaccaaacacgttacccgacctcgttattttacgacaactatgataaaattctgaagaaaaaataaaaaaattttcatacttcttgcttttatttaaaccattgaatgatttcttttgaacaaaactaccgttttgagaaagaacgacctcgaagaaaattttttctggagtcatgtggtttgtgcaatgggctggagcaataaaatgctgttgatactattttaagacttcttttttatttttttaaaagtatgaagaacgaaaataaatttggtaacttactaaagaaaacttgttttgatggScRPL18B Promoter540560580600620640660680700
tgtttcaccaaaggaaatagaaagaaaaaatcaattagaagaaaacaaaaaacaaaagatctatggacaagaagtattctatcggactggatatcgggactaatagcgtcgggtgggccgtgatcactgacgagtacaaggtgccctctaagaagttcaaggtgctcgggaacacacaaagtggtttcctttatctttcttttttagttaatcttcttttgttttttgttttctagatacctgttcttcataagatagcctgacctatagccctgattatcgcagcccacccggcactagtgactgctcatgttccacgggagattcttcaagttccacgagcccttgtgBglIICas9ScRPL18B Promoter720740760780800820840860
cgaccggcattccatcaagaaaaatctgatcggagctctcctctttgattcaggggaaaccgctgaagcaacccgcctcaagcggactgctagacggcggtacaccaggaggaagaaccggatttgttaccttcaagagatattctccaacgaaatggcaaaggtcgacgacagcgctggccgtaaggtagttctttttagactagcctcgagaggagaaactaagtcccctttggcgacttcgttgggcggagttcgcctgacgatctgccgccatgtggtcctccttcttggcctaaacaatggaagttctctataagaggttgctttaccgtttccagctgctgtcgSalICas98809009209409609801,0001,0201,040
ttcttccataggctggaagaatcattcctcgtggaagaggataagaagcatgaacggcatcccatcttcggtaatatcgtcgacgaggtggcctatcacgagaaatacccaaccatctaccatcttcgcaaaaagctggtggactcaaccgacaaggcagacctccggcttatctaagaaggtatccgaccttcttagtaaggagcaccttctcctattcttcgtacttgccgtagggtagaagccattatagcagctgctccaccggatagtgctctttatgggttggtagatggtagaagcgtttttcgaccacctgagttggctgttccgtctggaggccgaatagaSalISgrDICas91,0601,0801,1001,1201,1401,1601,1801,2001,220
acctggccctggcccacatgatcaagttcagaggccacttcctgatcgagggcgacctcaatcctgacaatagcgatgtggataaactgttcatccagctggtgcagacttacaaccagctctttgaagagaaccccatcaatgcaagcggagtcgatgccaaggccattctgtctggaccgggaccgggtgtactagttcaagtctccggtgaaggactagctcccgctggagttaggactgttatcgctacacctatttgacaagtaggtcgaccacgtctgaatgttggtcgagaaacttctcttggggtagttacgttcgcctcagctacggttccggtaagacagBtgZICas91,2401,2601,2801,3001,3201,3401,3601,3801,400
agcccggctgtcaaagagccgcagacttgagaatcttatcgctcagctgccgggtgaaaagaaaaatggactgttcgggaacctgattgctctttcacttgggctgactcccaatttcaagtctaatttcgacctggcagaggatgccaagctgcaactgtccaaggacacctattcgggccgacagtttctcggcgtctgaactcttagaatagcgagtcgacggcccacttttctttttacctgacaagcccttggactaacgagaaagtgaacccgactgagggttaaagttcagattaaagctggaccgtctcctacggttcgacgttgacaggttcctgtggataBlpIBstAPICas91,4201,4401,4601,4801,5001,5201,5401,560
gatgacgatctcgacaacctcctggcccagatcggtgaccaatacgccgaccttttccttgctgctaagaatctttctgacgccatcctgctgtctgacattctccgcgtgaacactgaaatcaccaaggcccctctttcagcttcaatgattaagcggtatgatgagcaccaccctactgctagagctgttggaggaccgggtctagccactggttatgcggctggaaaaggaacgacgattcttagaaagactgcggtaggacgacagactgtaagaggcgcacttgtgactttagtggttccggggagaaagtcgaagttactaattcgccatactactcgtggtggBsaBIBstEIICas91,5801,6001,6201,6401,6601,6801,7001,7201,740
aggacctgaccctgcttaaggcactcgtccggcagcagcttccggagaagtacaaggaaatcttctttgaccagtcaaagaatggatacgccggctacatcgacggaggtgcctcccaagaggaattttataagtttatcaaacctatccttgagaagatggacggcaccgaagatcctggactgggacgaattccgtgagcaggccgtcgtcgaaggcctcttcatgttcctttagaagaaactggtcagtttcttacctatgcggccgatgtagctgcctccacggagggttctccttaaaatattcaaatagtttggataggaactcttctacctgccgtggcttctPsiISapIBspQICas91,7601,7801,8001,8201,8401,8601,8801,9001,920
gctcctcgtgaaactgaatcgggaggatctgctgcggaagcagcgcactttcgacaatgggagcattccccaccagatccatcttggggagcttcacgccatccttcggcgccaagaggacttctacccctttcttaaggacaacagggagaagattgagaaaattctcactttccgaggagcactttgacttagccctcctagacgacgccttcgtcgcgtgaaagctgttaccctcgtaaggggtggtctaggtagaacccctcgaagtgcggtaggaagccgcggttctcctgaagatggggaaagaattcctgttgtccctcttctaactcttttaagagtgaaagCas91,9401,9601,9802,0002,0202,0402,0602,0802,100
cgcatcccctactacgtgggacccctcgccagaggaaatagccggtttgcttggatgaccagaaagtcagaagaaactatcactccctggaacttcgaagaggtggtggacaagggagccagcgctcagtcattcatcgaacggatgactaacttcgataagaacctccccaatggcgtaggggatgatgcaccctggggagcggtctcctttatcggccaaacgaacctactggtctttcagtcttctttgatagtgagggaccttgaagcttctccaccacctgttccctcggtcgcgagtcagtaagtagcttgcctactgattgaagctattcttggaggggttacKflICas92,1202,1402,1602,1802,2002,2202,2402,260
agaaggtcctgccgaaacattccctgctctacgagtactttaccgtgtacaacgagctgaccaaggtgaaatatgtcaccgaagggatgaggaagcccgcattcctgtcaggcgaacaaaagaaggcaattgtggaccttctgttcaagaccaatagaaaggtgaccgtgaagcatcttccaggacggctttgtaagggacgagatgctcatgaaatggcacatgttgctcgactggttccactttatacagtggcttccctactccttcgggcgtaaggacagtccgcttgttttcttccgttaacacctggaagacaagttctggttatctttccactggcacttcgtBsrGIBstEIICas92,2802,3002,3202,3402,3602,3802,4002,4202,440
gctgaaggaggactatttcaagaaaattgaatgcttcgactctgtggagattagcggggtcgaagatcggttcaacgcaagcctgggtacttaccatgatctgcttaagatcatcaaggacaaggattttctggacaatgaggagaacgaggacatccttgaggacattgtcctgcgacttcctcctgataaagttcttttaacttacgaagctgagacacctctaatcgccccagcttctagccaagttgcgttcggacccatgaatggtactagacgaattctagtagttcctgttcctaaaagacctgttactcctcttgctcctgtaggaactcctgtaacaggacPflFITth111ICas92,4602,4802,5002,5202,5402,5602,5802,6002,620
actctcactctgttcgaggaccgggaaatgatcgaggagaggcttaagacctacgcccatctgttcgacgataaagtgatgaagcaacttaaacggagaagatataccggatggggacgccttagccgcaaactcatcaacggaatccgggacaaacagagcggaaagaccattctgagagtgagacaagctcctggccctttactagctcctctccgaattctggatgcgggtagacaagctgctatttcactacttcgttgaatttgcctcttctatatggcctacccctgcggaatcggcgtttgagtagttgccttaggccctgtttgtctcgcctttctggtaagPfoICas92,6402,6602,6802,7002,7202,7402,7602,7802,800
ttgatttccttaagagcgacggattcgctaatcgcaacttcatgcaacttatccatgatgattccctgacctttaaggaggacatccagaaggcccaagtgtctggacaaggtgactcactgcacgagcatatcgcaaatctggctggttcacccgctattaagaagggtattctaactaaaggaattctcgctgcctaagcgattagcgttgaagtacgttgaataggtactactaagggactggaaattcctcctgtaggtcttccgggttcacagacctgttccactgagtgacgtgctcgtatagcgtttagaccgaccaagtgggcgataattcttcccataagaCas92,8202,8402,8602,8802,9002,9202,9402,960
ccagaccgtgaaagtcgtggacgagctggtcaaggtgatgggtcgccataaaccagagaacattgtcatcgagatggccagggaaaaccagactacccagaagggacagaagaacagcagggagcggatgaaaagaattgaggaagggattaaggagctcgggtcacagatccttggtctggcactttcagcacctgctcgaccagttccactacccagcggtatttggtctcttgtaacagtagctctaccggtcccttttggtctgatgggtcttccctgtcttcttgtcgtccctcgcctacttttcttaactccttccctaattcctcgagcccagtgtctaggaaMscICas92,9803,0003,0203,0403,0603,0803,1003,1203,140
aaagagcacccggtggaaaacacccagcttcagaatgagaagctctatctgtactaccttcaaaatggacgcgatatgtatgtggaccaagagcttgatatcaacaggctctcagactacgacgtggaccatatcgtccctcagagcttcctcaaagacgactcaattgacaatatttctcgtgggccaccttttgtgggtcgaagtcttactcttcgagatagacatgatggaagttttacctgcgctatacatacacctggttctcgaactatagttgtccgagagtctgatgctgcacctggtatagcagggagtctcgaaggagtttctgctgagttaactgttatCas93,1603,1803,2003,2203,2403,2603,2803,3003,320
aggtgctgactcgctcagacaagaaccggggaaagtcagataacgtgccctcagaggaagtcgtgaaaaagatgaagaactattggcgccagcttctgaacgcaaagctgatcactcagcggaagttcgacaatctcactaaggctgagaggggcggactgagcgaactggacaatccacgactgagcgagtctgttcttggcccctttcagtctattgcacgggagtctccttcagcactttttctacttcttgataaccgcggtcgaagacttgcgtttcgactagtgagtcgccttcaagctgttagagtgattccgactctccccgcctgactcgcttgacctgttCas93,3403,3603,3803,4003,4203,4403,4603,4803,500
agcaggattcattaaacggcaacttgtggagactcggcagattactaaacatgtcgcccaaatccttgactcacgcatgaataccaagtacgacgaaaacgacaaacttatccgcgaggtgaaggtgattaccctgaagtccaagctggtcagcgatttcagaaaggactttcaatcgtcctaagtaatttgccgttgaacacctctgagccgtctaatgatttgtacagcgggtttaggaactgagtgcgtacttatggttcatgctgcttttgctgtttgaataggcgctccacttccactaatgggacttcaggttcgaccagtcgctaaagtctttcctgaaagttNmeAIIICas93,5203,5403,5603,5803,6003,6203,6403,660
ttctacaaagtgcgggagatcaataactatcatcatgctcatgacgcatatctgaatgccgtggtgggaaccgccctgatcaagaagtacccaaagctggaaagcgagttcgtgtacggagactacaaggtctacgacgtgcgcaagatgattgccaaatctgagcaggagatcgaagatgtttcacgccctctagttattgatagtagtacgagtactgcgtatagacttacggcaccacccttggcgggactagttcttcatgggtttcgacctttcgctcaagcacatgcctctgatgttccagatgctgcacgcgttctactaacggtttagactcgtcctctagcBtgICas93,6803,7003,7203,7403,7603,7803,8003,8203,840
gaaaggccaccgcaaagtacttcttctacagcaacatcatgaatttcttcaagaccgaaatcacccttgcaaacggtgagatccggaagaggccgctcatcgagactaatggggagactggcgaaatcgtgtgggacaagggcagagatttcgctaccgtgcgcaaagtgctttcctttccggtggcgtttcatgaagaagatgtcgttgtagtacttaaagaagttctggctttagtgggaacgtttgccactctaggccttctccggcgagtagctctgattacccctctgaccgctttagcacaccctgttcccgtctctaaagcgatggcacgcgtttcacgaaagCas93,8603,8803,9003,9203,9403,9603,9804,0004,020
tatgcctcaagtgaacatcgtgaagaaaaccgaggtgcaaaccggaggcttttctaaggaatcaatcctccccaagcgcaactccgacaagctcattgcaaggaagaaggattgggaccctaagaagtacggcggattcgattcaccaactgtggcttattctgtcctggtcgtgatacggagttcacttgtagcacttcttttggctccacgtttggcctccgaaaagattccttagttaggaggggttcgcgttgaggctgttcgagtaacgttccttcttcctaaccctgggattcttcatgccgcctaagctaagtggttgacaccgaataagacaggaccagcacKflICas94,0404,0604,0804,1004,1204,1404,1604,1804,200
gctaaggtggaaaaaggaaagtctaagaagctcaagagcgtgaaggaactgctgggtatcaccattatggagcgcagctccttcgagaagaacccaattgactttctcgaagccaaaggttacaaggaagtcaagaaggaccttatcatcaagctcccaaagtatagcctgttcgcgattccacctttttcctttcagattcttcgagttctcgcacttccttgacgacccatagtggtaatacctcgcgtcgaggaagctcttcttgggttaactgaaagagcttcggtttccaatgttccttcagttcttcctggaatagtagttcgagggtttcatatcggacaagcCas94,2204,2404,2604,2804,3004,3204,3404,360
aactggagaatgggcggaagcggatgctcgcctccgctggcgaacttcagaagggtaatgagctggctctcccctccaagtacgtgaatttcctctaccttgcaagccattacgagaagctgaaggggagccccgaggacaacgagcaaaagcaactgtttgtggagcagcataattgacctcttacccgccttcgcctacgagcggaggcgaccgcttgaagtcttcccattactcgaccgagaggggaggttcatgcacttaaaggagatggaacgttcggtaatgctcttcgacttcccctcggggctcctgttgctcgttttcgttgacaaacacctcgtcgtattCas94,3804,4004,4204,4404,4604,4804,5004,5204,540
gcattatctggacgagatcattgagcagatttccgagttttctaaacgcgtcattctcgctgatgccaacctcgataaagtccttagcgcatacaataagcacagagacaaaccaattcgggagcaggctgagaatatcatccacctgttcaccctcaccaatcttggtgcccctcgtaatagacctgctctagtaactcgtctaaaggctcaaaagatttgcgcagtaagagcgactacggttggagctatttcaggaatcgcgtatgttattcgtgtctctgtttggttaagccctcgtccgactcttatagtaggtggacaagtgggagtggttagaaccacggggaCas94,5604,5804,6004,6204,6404,6604,6804,7004,720
gccgcattcaagtacttcgacaccaccatcgaccggaaacgctatacctccaccaaagaagtgctggacgccaccctcatccaccagagcatcaccggactttacgaaactcggattgacctctcacagctcggaggggatgagggagctgatccaaaaaagaagagaaaggtagcggcgtaagttcatgaagctgtggtggtagctggcctttgcgatatggaggtggtttcttcacgacctgcggtgggagtaggtggtctcgtagtggcctgaaatgctttgagcctaactggagagtgtcgagcctcccctactccctcgactaggttttttcttctctttccatcCas92x NLS Tag4,7404,7604,7804,8004,8204,8404,8604,8804,900
atccaaaaaagaagagaaaggtataaggatcctaactcgagattgaattgaattgaaatcgatagatcaatttttttcttttctctttccccatcctttacgctaaaataatagtttattttattttttgaatattttttatttatatacgtatatatagactattatttatctttaggttttttcttctctttccatattcctaggattgagctctaacttaacttaactttagctatctagttaaaaaaagaaaagagaaaggggtaggaaatgcgattttattatcaaataaaataaaaaacttataaaaaataaatatatgcatatatatctgataataaatagaaClaITliIXhoIBamHIBspDISnaBIPaeR7IScPGK1 Terminator2x NLS Tag4,9204,9404,9604,9805,0005,0205,0405,060
ttaatgattattaagatttttattaaaaaaaaattcgctcctcttttaatgcctttatgcagtttttttttcccattcgatatttctatgtgctgCCAAGATATCAACAACAGAGGACATATGCCCTACCTCCATGATCTACTGACGTCCCTGAGGCTGCAATTCATGTAATGGGaattactaataattctaaaaataatttttttttaagcgaggagaaaattacggaaatacgtcaaaaaaaaagggtaagctataaagatacacgacGGTTCTATAGTTGTTGTCTCCTGTATACGGGATGGAGGTACTAGATGACTGCAGGGACTCCGACGTTAAGTACATTACCCZraIAatIIBsu36IScPGK1 TerminatorJunk for Gap Repair5,0805,1005,1205,1405,1605,1805,2005,2205,240
GCAGTATCCGCGGCAAGTCCTAGTGCAATGGCGGTTTTTTACCCTCGTTCTGAAGAAGAGGCGACGCGGGTGCGGTCATCACTAATGTGGAAATTGGTAAGACTCTCGGGCCTCCGCCTTTAGGCGGTGCTTACTCTTTCATAAAGGGGCTGTTAGTTATGCaacgatgtgcttcCGTCATAGGCGCCGTTCAGGATCACGTTACCGCCAAAAAATGGGAGCAAGACTTCTTCTCCGCTGCGCCCACGCCAGTAGTGATTACACCTTTAACCATTCTGAGAGCCCGGAGGCGGAAATCCGCCACGAATGAGAAAGTATTTCCCCGACAATCAATACGttgctacacgaagBtgISacIIJunk for Gap Repair5,2605,2805,3005,3205,3405,3605,3805,4005,420
agtattacattttttgccttcaacgccttgattgttctatttttgctaataataaatctatttcatcggactaaaagtccattagttgtaagcggatttagctcagttgggagagcgccagactgaagaaaaacttcggtcaagtcatctggaggtcctgtgttcgatccacagatcataatgtaaaaaacggaagttgcggaactaacaagataaaaacgattattatttagataaagtagcctgattttcaggtaatcaacattcgcctaaatcgagtcaaccctctcgcggtctgacttctttttgaagccagttcagtagacctccaggacacaagctaggtgtctAhdIEcoRItRNA Phe PromotertRNA Phe5,4405,4605,4805,5005,5205,5405,5605,5805,600
attcgcagatggccggcatggtcccagcctcctcgctggcgccggctgggcaacaccttcgggtggcgaatgggacttgagacggaaagtgaaacgtgatttcatgcgtcattttgaacattttgtaaatcttatttaataatgtgtgcggcaattcacatttaatttatgaatgtaagcgtctaccggccgtaccagggtcggaggagcgaccgcggccgacccgttgtggaagcccaccgcttaccctgaactctgcctttcactttgcactaaagtacgcagtaaaacttgtaaaacatttagaataaattattacacacgccgttaagtgtaaattaaatacttacBglIBsmBIBtgZIEsp3IBBa_J72163 GlpT PromoterHDV Ribozyme5,6205,6405,6605,6805,7005,7205,7405,760
ttttcttaacatcgcggcaactcaagaaacggcaggttcggatcttagctactagagaaagaggagaaatactagatgcgtaaaggcgaagagctgttcactggtgtcgtccctattctggtggaactggatggtgatgtcaacggtcataagttttccgtgcgtggcgagggtgaaaagaattgtagcgccgttgagttctttgccgtccaagcctagaatcgatgatctctttctcctctttatgatctacgcatttccgcttctcgacaagtgaccacagcagggataagaccaccttgacctaccactacagttgccagtattcaaaaggcacgcaccgctcccacSapIBfuAIBspMIBspQIsfGFPBBa_J72163 GlpT PromotersfGFP Ribosome Binding Site5,7805,8005,8205,8405,8605,8805,9005,9205,940
aaggtgacgcaactaatggtaaactgacgctgaagttcatctgtactactggtaaactgccggttccttggccgactctggtaacgacgctgacttatggtgttcagtgctttgctcgttatccggaccatatgaagcagcatgacttcttcaagtccgccatgccggaaggctattccactgcgttgattaccatttgactgcgacttcaagtagacatgatgaccatttgacggccaaggaaccggctgagaccattgctgcgactgaataccacaagtcacgaaacgagcaataggcctggtatacttcgtcgtactgaagaagttcaggcggtacggccttccgatsfGFP5,9605,9806,0006,0206,0406,0606,0806,1006,120
tgtgcaggaacgcacgatttcctttaaggatgacggcacgtacaaaacgcgtgcggaagtgaaatttgaaggcgataccctggtaaaccgcattgagctgaaaggcattgactttaaagaggacggcaatatcctgggccataagctggaatacaattttaacagccacaatgttacacgtccttgcgtgctaaaggaaattcctactgccgtgcatgttttgcgcacgccttcactttaaacttccgctatgggaccatttggcgtaactcgactttccgtaactgaaatttctcctgccgttataggacccggtattcgaccttatgttaaaattgtcggtgttacaaBaeIsfGFP6,1406,1606,1806,2006,2206,2406,2606,2806,300
tacatcaccgccgataaacaaaaaaatggcattaaagcgaattttaaaattcgccacaacgtggaggatggcagcgtgcagctggctgatcactaccagcaaaacactccaatcggtgatggtcctgttctgctgccagacaatcactatctgagcacgcaaagcgttctgtctaatgtagtggcggctatttgtttttttaccgtaatttcgcttaaaattttaagcggtgttgcacctcctaccgtcgcacgtcgaccgactagtgatggtcgttttgtgaggttagccactaccaggacaagacgacggtctgttagtgatagactcgtgcgtttcgcaagacagatsfGFP6,3206,3406,3606,3806,4006,4206,4406,460
aagatccgaacgagaaacgcgatcatatggttctgctggagttcgtaaccgcagcgggcatcacgcatggtatggatgaactgtacaaatgaccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctacttctaggcttgctctttgcgctagtataccaagacgacctcaagcattggcgtcgcccgtagtgcgtaccatacctacttgacatgtttactggtccgtagtttattttgctttccgagtcagctttctgacccggaaagcaaaatagacaacaaacagccacttgcgagagatgBmrIBsrGIsfGFPBBa_B0015 Terminator6,4806,5006,5206,5406,5606,5806,6006,6206,640
tagagtcacactggctcaccttcgggtgggcctttctgcgtttatacgtctcagttttagagctagaaatagcaagttaaaataaggctagtccgttatcaacttgaaaaagtggcaccgagtcggtgctttttttattttttgtcactattgttatgtaaaatgccacctctgaatctcagtgtgaccgagtggaagcccacccggaaagacgcaaatatgcagagtcaaaatctcgatctttatcgttcaattttattccgatcaggcaatagttgaactttttcaccgtggctcagccacgaaaaaaataaaaaacagtgataacaatacattttacggtggagactBsmBIEsp3IsgRNABBa_B0015 TerminatortSNR526,6606,6806,7006,7206,7406,7606,7806,8006,820
cagtatggaacgcaaacttctgtctagtggatagctgGACATTCCAGGCAGTGCCTCTGCCGCCGGACCCCTCTCGTGATTGGGTAGCTGGACATGCCCTTGTAAGATATAACAAGAGCCTGCCTGTCTAATGATCTCACGGCGAAAGTCGGGGAGACAGCAGCGGCTGCAGACAgtcataccttgcgtttgaagacagatcacctatcgacCTGTAAGGTCCGTCACGGAGACGGCGGCCTGGGGAGAGCACTAACCCATCGACCTGTACGGGAACATTCTATATTGTTCTCGGACGGACAGATTACTAGAGTGCCGCTTTCAGCCCCTCTGTCGTCGCCGACGTCTGTPstIBstAPIJunk for Gap RepairtSNR526,8406,8606,8806,9006,9206,9406,9606,9807,000
TTATACCGCAACAACACTAAGGTGAGATAACTCCGTACATTGACTACGCGTTCCTCTAGACCTTACTTGACCGGATACAGTGTCTTTGACACGTTTATGGGTTACAGCAATCACATCCAAGACTGGCTATGCACGAAGCAACTCTTGAGTGTTAAAATGTTGACCCCTGTATTTGAATATGGCGTTGTTGTGATTCCACTCTATTGAGGCATGTAACTGATGCGCAAGGAGATCTGGAATGAACTGGCCTATGTCACAGAAACTGTGCAAATACCCAATGTCGTTAGTGTAGGTTCTGACCGATACGTGCTTCGTTGAGAACTCACAATTTTACAACTGGGGACATAAACXbaIJunk for Gap Repair7,0207,0407,0607,0807,1007,1207,1407,160
GGATGCGGGTAGTAGATGAGTGCAGGATATCagcagttacagagatgttacgaaccactagtgcactgcagtacaaacacagtcctttcccgcaattttctttttctattactcttggcctcctctagtacactctatatttttttatgcctcggtaatgattttcattttttttCCTACGCCCATCATCTACTCACGTCCTATAGtcgtcaatgtctctacaatgcttggtgatcacgtgacgtcatgtttgtgtcaggaaagggcgttaaaagaaaaagataatgagaaccggaggagatcatgtgagatataaaaaaatacggagccattactaaaagtaaaaaaaaPstISpeIApaLIHIS3 PromoterJunk for Gap RepairConE scar7,1807,2007,2207,2407,2607,2807,3007,3207,340
tttccacctagcggatgactctttttttttcttagcgattggcattatcacataatgaattatacattatataaagtaatgtgatttcttcgaagaatatactaaaaaatgagcaggcaagataaacgaaggcaaagatgacagagcagaaagccctagtaaagcgtattacaaaaaaggtggatcgcctactgagaaaaaaaaagaatcgctaaccgtaatagtgtattacttaatatgtaatatatttcattacactaaagaagcttcttatatgattttttactcgtccgttctatttgcttccgtttctactgtctcgtctttcgggatcatttcgcataatgtttHIS3 PromoterHIS37,3607,3807,4007,4207,4407,4607,4807,5007,520
tgaaaccaagattcagattgcgatctctttaaagggtggtcccctagcgatagagcactcgatcttcccagaaaaagaggcagaagcagtagcagaacaggccacacaatcgcaagtgattaacgtccacacaggtatagggtttctggaccatatgatacatgctctggccaagactttggttctaagtctaacgctagagaaatttcccaccaggggatcgctatctcgtgagctagaagggtctttttctccgtcttcgtcatcgtcttgtccggtgtgttagcgttcactaattgcaggtgtgtccatatcccaaagacctggtatactatgtacgagaccggttcMscIBsaBIHIS37,5407,5607,5807,6007,6207,6407,6607,6807,700
cattccggctggtcgctaatcgttgagtgcattggtgacttacacatagacgaccatcacaccactgaggactgcgggattgctctcggtcaagcttttaaagaggccctaggggccgtgcgtggagtaaaaaggtttggatcaggatttgcgcctttggatgaggcactttccagtaaggccgaccagcgattagcaactcacgtaaccactgaatgtgtatctgctggtagtgtggtgactcctgacgccctaacgagagccagttcgaaaatttctccgggatccccggcacgcacctcatttttccaaacctagtcctaaacgcggaaacctactccgtgaaaggtBglISfiIAvrIIHIS37,7207,7407,7607,7807,8007,8207,8407,860
gagcggtggttgatctttcgaacaggccgtacgcagttgtcgaacttggtttgcaaagggagaaagtaggtgatctctcttgcgagatgatcccgcattttcttgaaagctttgcagaggctagcagaattaccctccacgttgattgtctgcgaggcaagaatgatcatcaccgctcgccaccaactagaaagcttgtccggcatgcgtcaacagcttgaaccaaacgtttccctctttcatccactagagagaacgctctactagggcgtaaaagaactttcgaaacgtctccgatcgtcttaatgggaggtgcaactaacagacgctccgttcttactagtagtggcBmtINheIBsiWICspCIHIS37,8807,9007,9207,9407,9607,9808,0008,0208,040
tagtgagagtgcgttcaaggctcttgcggttgccataagagaagccacctcgcccaatggtaccaacgatgttccctccaccaaaggtgttcttatgtagtgacaccgattatttaaagctgctgcatacgatatatatacatgtgtatatatgtatacctatgaatgtcagtaaatcactctcacgcaagttccgagaacgccaacggtattctcttcggtggagcgggttaccatggttgctacaagggaggtggtttccacaagaatacatcactgtggctaataaatttcgacgacgtatgctatatatatgtacacatatatacatatggatacttacagtcattKpnIAcc65IBstZ17IHIS3HIS3 Terminator8,0608,0808,1008,1208,1408,1608,1808,2008,220
gtatgtatacgaacagtatgatactgaagatgacaaggtaatgcatcattctatacgtgtcattctgaacgaggcgcgctttccttttttctttttgctttttctttttttttctcttgaactcgacggatcatagagtaacgaagcatctgtgcttcattttgtagaacaaaaacatacatatgcttgtcatactatgacttctactgttccattacgtagtaagatatgcacagtaagacttgctccgcgcgaaaggaaaaaagaaaaacgaaaaagaaaaaaaaagagaacttgagctgcctagtatctcattgcttcgtagacacgaagtaaaacatcttgtttttBstZ17IHIS3 Terminator2micron8,2408,2608,2808,3008,3208,3408,3608,3808,400
tgcaacgcgagagcgctaatttttcaaacaaagaatctgagctgcatttttacagaacagaaatgcaacgcgaaagcgctattttaccaacgaagaatctgtgcttcatttttgtaaaacaaaaatgcaacgcgagagcgctaatttttcaaacaaagaatctgagctgcattttacgttgcgctctcgcgattaaaaagtttgtttcttagactcgacgtaaaaatgtcttgtctttacgttgcgctttcgcgataaaatggttgcttcttagacacgaagtaaaaacattttgtttttacgttgcgctctcgcgattaaaaagtttgtttcttagactcgacgtaaaa2micron8,4208,4408,4608,4808,5008,5208,5408,560
tacagaacagaaatgcaacgcgagagcgctattttaccaacaaagaatctatacttcttttttgttctacaaaaatgcatcccgagagcgctatttttctaacaaagcatcttagattactttttttctcctttgtgcgctctataatgcagtctcttgataactttttgcactgatgtcttgtctttacgttgcgctctcgcgataaaatggttgtttcttagatatgaagaaaaaacaagatgtttttacgtagggctctcgcgataaaaagattgtttcgtagaatctaatgaaaaaaagaggaaacacgcgagatattacgtcagagaactattgaaaaacgtgac2micron8,5808,6008,6208,6408,6608,6808,7008,7208,740
taggtccgttaaggttagaagaaggctactttggtgtctattttctcttccataaaaaaagcctgactccacttcccgcgtttactgattactagcgaagctgcgggtgcattttttcaagataaaggcatccccgattatattctataccgatgtggattgcgcatactttgtgatccaggcaattccaatcttcttccgatgaaaccacagataaaagagaaggtatttttttcggactgaggtgaagggcgcaaatgactaatgatcgcttcgacgcccacgtaaaaaagttctatttccgtaggggctaatataagatatggctacacctaacgcgtatgaaacacAjuI2micron8,7608,7808,8008,8208,8408,8608,8808,9008,920
aacagaaagtgatagcgttgatgattcttcattggtcagaaaattatgaacggtttcttctattttgtctctatatactacgtataggaaatgtttacattttcgtattgttttcgattcactctatgaatagttcttactacaatttttttgtctaaagagtaatactagagatttgtctttcactatcgcaactactaagaagtaaccagtcttttaatacttgccaaagaagataaaacagagatatatgatgcatatcctttacaaatgtaaaagcataacaaaagctaagtgagatacttatcaagaatgatgttaaaaaaacagatttctcattatgatctctaSnaBI2micron8,9408,9608,9809,0009,0209,0409,0609,0809,100
aaacataaaaaatgtagaggtcgagtttagatgcaagttcaaggagcgaaaggtggatgggtaggttatatagggatatagcacagagatatatagcaaagagatacttttgagcaatgtttgtggaagcggtattcgcaatattttagtagctcgttacagtccggtgcgtttttttgtattttttacatctccagctcaaatctacgttcaagttcctcgctttccacctacccatccaatatatccctatatcgtgtctctatatatcgtttctctatgaaaactcgttacaaacaccttcgccataagcgttataaaatcatcgagcaatgtcaggccacgcaaaaCspCI2micron9,1209,1409,1609,1809,2009,2209,2409,260
tggttttttgaaagtgcgtcatcagagcgcttttggttttcaaaagcgctctgaagttcctatactttctagctagagaataggaacttcccgagcggccgcgtgttacaaccaattaaccaattctgattagaaaaactcatcgagcatcaaatgaaactgcaatttattcataaccaaaaaactttcacgcagtagtctcgcgaaaaccaaaagttttcgcgagacttcaaggatatgaaagatcgatctcttatccttgaagggctcgccggcgcacaatgttggttaattggttaagactaatctttttgagtagctcgtagtttactttgacgttaaataagtatBarIEagINotI2micronKanRFRT siteKanR Terminator9,2809,3009,3209,3409,3609,3809,4009,4209,440
tcaggattatcaataccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcaccgaggcagttccataggatggcaagatcctggtatcggtctgcgattccgactcgtccaacatcaatacaacctattaatttcccctcgtcaaaaataaggttatcaagtgagaagtcctaatagttatggtataaaaactttttcggcaaagacattacttcctcttttgagtggctccgtcaaggtatcctaccgttctaggaccatagccagacgctaaggctgagcaggttgtagttatgttggataattaaaggggagcagtttttattccaatagttcactctAseIKanR9,4609,4809,5009,5209,5409,5609,5809,6009,620
aatcaccatgagtgacgactgaatccggtgagaatggcaaaagcttatgcatttctttccagacttgttcaacaggccagccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttattcattcgtgattgcgcctgagcgaggcgaaatacgcgatcgctgttaaattagtggtactcactgctgacttaggccactcttaccgttttcgaatacgtaaagaaaggtctgaacaagttgtccggtcggtaatgcgagcagtagttttagtgagcgtagttggtttggcaataagtaagcactaacgcggactcgctccgctttatgcgctagcgacaatttAjuIPvuIAsiSIKanR9,6409,6609,6809,7009,7209,7409,7609,7809,800
aggacaattacaaacaggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcacctgaatcaggatattcttctaatacctggaatgctgttttcccggggatcgcagtggtgagtaaccatgcatcatcaggagtacggataaaatgcttgatggtctcctgttaatgtttgtccttagcttacgttggccgcgtccttgtgacggtcgcgtagttgttataaaagtggacttagtcctataagaagattatggaccttacgacaaaagggcccctagcgtcaccactcattggtacgtagtagtcctcatgcctattttacgaactaccagSmaIXmaITspMIKanR9,8209,8409,8609,8809,9009,9209,9409,960
ggaagaggcataaattccgtcagccagtttagtctgaccatctcatctgtaacatcattggcaacgctacctttgccatgtttcagaaacaactctggcgcatcgggcttcccatacaatcgatagattgtcgcacctgattgcccgacattatcgcgagcccatttatacccatccttctccgtatttaaggcagtcggtcaaatcagactggtagagtagacattgtagtaaccgttgcgatggaaacggtacaaagtctttgttgagaccgcgtagcccgaagggtatgttagctatctaacagcgtggactaacgggctgtaatagcgctcgggtaaatatgggtaClaINruIBspDIKanR9,98010,00010,02010,04010,06010,08010,10010,12010,140
ataaatcagcatccatgttggaatttaatcgcggcctggagcaagacgtttcccgttgaatatggctcataacaccccttgtattactgtttatgtaagcagacagttttattgttcatgatgatatatttttatcttgtgcaatgtaacatcagagattttgagacacaacgtgtatttagtcgtaggtacaaccttaaattagcgccggacctcgttctgcaaagggcaacttataccgagtattgtggggaacataatgacaaatacattcgtctgtcaaaataacaagtactactatataaaaatagaacacgttacattgtagtctctaaaactctgtgttgcacKanR PromoterKanR10,16010,18010,20010,22010,24010,26010,28010,30010,320
gctttgttgaataaatcgaacttttgctgagttgaaggatcagtcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgccgaaacaacttatttagcttgaaaacgactcaacttcctagtcagtactggttttagggaattgcactcaaaagcaaggtgactcgcagtctggggcatcttttctagtttcctagaagaactctaggaaaaaaagacgcgcattagacgacgaacgtttgtttttttggtggcgKanR PromoterColE110,34010,36010,38010,40010,42010,44010,46010,48010,500
taccagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgttcttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccatggtcgccaccaaacaaacggcctagttctcgatggttgagaaaaaggcttccattgaccgaagtcgtctcgcgtctatggtttatgacaagaagatcacatcggcatcaatccggtggtgaagttcttgagacatcgtggcggatgtatggagcgagacgattaggacaatggColE110,52010,54010,56010,58010,60010,62010,64010,660
agtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgcctcaccgacgacggtcaccgctattcagcacagaatggcccaacctgagttctgctatcaatggcctattccgcgtcgccagcccgacttgccccccaagcacgtgtgtcgggtcgaacctcgcttgctggatgtggcttgactctatggatgtcgcactcgatactctttcgcggApaLIColE110,68010,70010,72010,74010,76010,78010,80010,82010,840
acgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctgcgaagggcttccctctttccgcctgtccataggccattcgccgtcccagccttgtcctctcgcgtgctccctcgaaggtccccctttgcggaccatagaaatatcaggacagcccaaagcggtggagactgaactcgcagctaaaaacactacgagcagtccccccgcctcggColE110,86010,88010,90010,92010,94010,96010,98011,00011,020
tatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtatacctttttgcggtcgttgcgccggaaaaatgccaaggaccggaaaacgaccggaaaacgagtgtacaagaaaggacgcaataggggactaagacacctattggcaColE111,04011,06011,08011,10011,120
  • Plasmid
Editing disabled on read-only sequence.
11132 bp800085009000950010000105005001000150020002500Cas9

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

History

Lineage

 Show Full History
Change User Timestamp

Sequence Alignments

Saved Alignments

Sequence Info

Tags

Name
Parent Version
Folder
Topology
Start Index
Locked
Created
--
Length
--
Export Data
Split Workspace
Bases
11132