Welcome to Benchling!

You're looking at a DNA Sequence. Here are some things you can do with it:

Create an alignment

  1. Create alignments with both DNA and AA sequences.
  2. Bulk-align multiple sequences at once.
  3. Powerful visualization tool to inspect alignments in detail.

Design a primer

Create a translation

Design a CRISPR guide

Assemble and transform a sequence

Benchling is actively tested against the latest versions of Chrome, Firefox, Safari, and Edge. **It doesn't look like your current browser is supported** - for more information, [click here](/browsers).
Monospace normal
Monospace bold
working...
Advanced Settings
XCW48 - pCOLADuet-WspR D70E
  • Sequence Map
Editing disabled on read-only sequence.
ggggaattgtgagcggataacaattcccctgtagaaataattttgtttaactttaataaggagatataccatgggcagcagccatcaccatcatcaccacagccaggatccgaattcgagctcggcgcgcctgcaggtcgacaagcttgcggccgcataatgcttaagtcgaacaccccttaacactcgcctattgttaaggggacatctttattaaaacaaattgaaattattcctctatatggtacccgtcgtcggtagtggtagtagtggtgtcggtcctaggcttaagctcgagccgcgcggacgtccagctgttcgaacgccggcgtattacgaattcagcttgtAscIBcgIEagINcoINotISacISbfIAflIIBamHIBfuAIBspMIEcoRIBssHIIBsiHKAIEco53kIHindIIINmeAIIIlacOHis-Tag20406080100120140160
gaaagtaatcgtattgtacacggccgcataatcgaaattaatacgactcactataggggaattgtgagcggataacaattccccatcttagtatattagttaagtataagaaggagatatacatatgcacaaccctcatgagagcaagaccgacctgggcgcccctctggacggcctttcattagcataacatgtgccggcgtattagctttaattatgctgagtgatatccccttaacactcgcctattgttaaggggtagaatcatataatcaattcatattcttcctctatatgtatacgtgttgggagtactctcgttctggctggacccgcggggagacctgccgBarIEagINdeITatIBsrGIMCS-2 ORFWspRlacOZFH066T7 promoter180200220240260280300320340
gcggtcatggtactgcttgtcgatgatcaggccatgatcggagaggctgtgcgtcgctcactggcgagcgaggcgggcatcgacttccatttctgttccgatccgcagcaggcggtggcggtggccaaccagatcaagccgacggtgatcctccaggaActggtgatgcccggcgcgccagtaccatgacgaacagctactagtccggtactagcctctccgacacgcagcgagtgaccgctcgctccgcccgtagctgaaggtaaagacaaggctaggcgtcgtccgccaccgccaccggttggtctagttcggctgccactaggaggtcctTgaccactacgggccgcBclIMscIPfoIMCS-2 ORFWspR360380400420440460480500520
tcgacggcctcacgctgctcgctgcctaccgcggcaacccggcgacccgcgacatcccgatcatcgtcctgtcgaccaaggaagagccgacggtgaagagcgcggcgttcgccgccggcgccaacgactacctggtcaagctgccggacgccatcgagctggtggcgcggatccgagctgccggagtgcgacgagcgacggatggcgccgttgggccgctgggcgctgtagggctagtagcaggacagctggttccttctcggctgccacttctcgcgccgcaagcggcggccgcggttgctgatggaccagttcgacggcctgcggtagctcgaccaccgcgcctaggcMreISapISapIBamHIBspQIBspQISacIISgrAISgrDIMCS-2 ORFWspR540560580600620640660680700
ctaccactcgcgttcgtacatcgccctgcagcaacgcgacgaggcctatcgggcgctgcgcgagagccagcagcagttgctggagaccaacctggtgctgcagcggctgatgaactccgacggcctgaccgggctctccaaccgtcgtcacttcgacgaatacctggagatggaggatggtgagcgcaagcatgtagcgggacgtcgttgcgctgctccggatagcccgcgacgcgctctcggtcgtcgtcaacgacctctggttggaccacgacgtcgccgactacttgaggctgccggactggcccgagaggttggcagcagtgaagctgcttatggacctctacctcBglIBsaIStuIBstAPIMCS-2 ORFWspR720740760780800820840860
tggcgccgctcgctgcgcgagcagtcgcaactgtcgctgctgatgatcgacgtggactatttcaagagctacaacgacaccttcggccacgtcgccggcgacgaggccctgcgccaggtcgccggggccatccgcgagggctgcagtcgctcctcggacctggcggctcggtacgaccgcggcgagcgacgcgctcgtcagcgttgacagcgacgactactagctgcacctgataaagttctcgatgttgctgtggaagccggtgcagcggccgctgctccgggacgcggtccagcggccccggtaggcgctcccgacgtcagcgaggagcctggaccgccgagccatgcMreIBseRISgrAIEcoO109IMCS-2 ORFWspR8809009209409609801,0001,0201,040
gcggcgaggagttcgccatggtcctcccgggcacctcgccgggcggcgcacggttgctggcggagaaggtccggcgcacggtggagagcctgcagatcagccacgaccagccacgcccgggctcgcacctgaccgtcagcatcggcgtcagcaccctggtgccgggcggcggcggcgccgctcctcaagcggtaccaggagggcccgtggagcggcccgccgcgtgccaacgaccgcctcttccaggccgcgtgccacctctcggacgtctagtcggtgctggtcggtgcgggcccgagcgtggactggcagtcgtagccgcagtcgtgggaccacggcccgccgccgccAleINcoISrfIBseRIMCS-2 ORFWspR1,0601,0801,1001,1201,1401,1601,1801,2001,220
gcaaaccttccgggttctcatcgagatggccgaccaggcgctctaccaggccaagaacaatggccgcaaccaggtgggcctgatggaacagccggtgccgccggccccggcgggctgactcgagtctggtaaagaaaccgctgctgcgaaatttgaacgccagcacatggactcgcgtttggaaggcccaagagtagctctaccggctggtccgcgagatggtccggttcttgttaccggcgttggtccacccggactaccttgtcggccacggcggccggggccgcccgactgagctcagaccatttctttggcgacgacgctttaaacttgcggtcgtgtacctgagcBglITliIXhoIPshAIPspXIPaeR7IMCS-2 ORFWspRS-Tag1,2401,2601,2801,3001,3201,3401,3601,3801,400
tctactagcgcagcttaattaacctaggctgctgccaccgctgagcaataactagcataaccccttggggcctctaaacgggtcttgaggggttttttgctgaaacctcaggcatttgagaagcacacggtcacactgcttccggtagtcaataaaccggtaaaccagcaatagaagatgatcgcgtcgaattaattggatccgacgacggtggcgactcgttattgatcgtattggggaaccccggagatttgcccagaactccccaaaaaacgactttggagtccgtaaactcttcgtgtgccagtgtgacgaaggccatcagttatttggccatttggtcgttatctAgeIBlpIPacIAvrIIBsu36IEcoO109IT7 TerminatorT7 Ter...H067)MCS-2 ORF1,4201,4401,4601,4801,5001,5201,5401,560
cataagcggctatttaacgaccctgccctgaaccgacgacaagctgacgaccgggtctccgcaagtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgctcatgaattaattcttagaaaaactcatcgagcatcgtattcgccgataaattgctgggacgggacttggctgctgttcgactgctggcccagaggcgttcaccgtgaaaagcccctttacacgcgccttggggataaacaaataaaaagatttatgtaagtttatacataggcgagtacttaattaagaatctttttgagtagctcgtagBsaIXmnIPflFITth111IKan1,5801,6001,6201,6401,6601,6801,7001,7201,740
aaatgaaactgcaatttattcatatcaggattatcaataccatatttttgaaaaagccgtttctgtaatgaaggagaaaactcaccgaggcagttccataggatggcaagatcctggtatcggtctgcgattccgactcgtccaacatcaatacaacctattaatttcccctcgttttactttgacgttaaataagtatagtcctaatagttatggtataaaaactttttcggcaaagacattacttcctcttttgagtggctccgtcaaggtatcctaccgttctaggaccatagccagacgctaaggctgagcaggttgtagttatgttggataattaaaggggagcaKan1,7601,7801,8001,8201,8401,8601,8801,9001,920
caaaaataaggttatcaagtgagaaatcaccatgagtgacgactgaatccggtgagaatggcaaaagtttatgcatttctttccagacttgttcaacaggccagccattacgctcgtcatcaaaatcactcgcatcaaccaaaccgttattcattcgtgattgcgcctgagcgaggtttttattccaatagttcactctttagtggtactcactgctgacttaggccactcttaccgttttcaaatacgtaaagaaaggtctgaacaagttgtccggtcggtaatgcgagcagtagttttagtgagcgtagttggtttggcaataagtaagcactaacgcggactcgctcAjuINsiIBsmBIEsp3IBpu10IKan1,9401,9601,9802,0002,0202,0402,0602,0802,100
acgaaatacgcggtcgctgttaaaaggacaattacaaacaggaatcgaatgcaaccggcgcaggaacactgccagcgcatcaacaatattttcacctgaatcaggatattcttctaatacctggaatgctgttttcccggggatcgcagtggtgagtaaccatgcatcatcaggatgctttatgcgccagcgacaattttcctgttaatgtttgtccttagcttacgttggccgcgtccttgtgacggtcgcgtagttgttataaaagtggacttagtcctataagaagattatggaccttacgacaaaagggcccctagcgtcaccactcattggtacgtagtagtcctBsmIBsmINsiISspIKan2,1202,1402,1602,1802,2002,2202,2402,260
gtacggataaaatgcttgatggtcggaagaggcataaattccgtcagccagtttagtctgaccatctcatctgtaacatcattggcaacgctacctttgccatgtttcagaaacaactctggcgcatcgggcttcccatacaatcgatagattgtcgcacctgattgcccgacatcatgcctattttacgaactaccagccttctccgtatttaaggcagtcggtcaaatcagactggtagagtagacattgtagtaaccgttgcgatggaaacggtacaaagtctttgttgagaccgcgtagcccgaagggtatgttagctatctaacagcgtggactaacgggctgtaClaIBspDIKan2,2802,3002,3202,3402,3602,3802,4002,4202,440
tatcgcgagcccatttatacccatataaatcagcatccatgttggaatttaatcgcggcctagagcaagacgtttcccgttgaatatggctcatactcttcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaatagcgctcgggtaaatatgggtatatttagtcgtaggtacaaccttaaattagcgccggatctcgttctgcaaagggcaacttataccgagtatgagaaggaaaaagttataataacttcgtaaatagtcccaataacagagtactcgcctatgtataaacttacataaatcttNruISspIKan2,4602,4802,5002,5202,5402,5602,5802,6002,620
aaataaacaaataggcatgctagcgcagaaacgtcctagaagatgccaggaggatacttagcagagagacaataaggccggagcgaagccgtttttccataggctccgcccccctgacgaacatcacgaaatctgacgctcaaatcagtggtggcgaaacccgacaggactataatttatttgtttatccgtacgatcgcgtctttgcaggatcttctacggtcctcctatgaatcgtctctctgttattccggcctcgcttcggcaaaaaggtatccgaggcggggggactgcttgtagtgctttagactgcgagtttagtcaccaccgctttgggctgtcctgatattBmtINheINspISphIColA ori2,6402,6602,6802,7002,7202,7402,7602,7802,800
agataccaggcgtttccccctgatggctccctcttgcgctctcctgttcccgtcctgcggcgtccgtgttgtggtggaggctttacccaaatcaccacgtcccgttccgtgtagacagttcgctccaagctgggctgtgtgcaagaaccccccgttcagcccgactgctgcgccttctatggtccgcaaagggggactaccgagggagaacgcgagaggacaagggcaggacgccgcaggcacaacaccacctccgaaatgggtttagtggtgcagggcaaggcacatctgtcaagcgaggttcgacccgacacacgttcttggggggcaagtcgggctgacgacgcggaBsmFIColA ori2,8202,8402,8602,8802,9002,9202,9402,960
tatccggtaactatcatcttgagtccaacccggaaagacacgacaaaacgccactggcagcagccattggtaactgagaattagtggatttagatatcgagagtcttgaagtggtggcctaacagaggctacactgaaaggacagtatttggtatctgcgctccactaaagccagataggccattgatagtagaactcaggttgggcctttctgtgctgttttgcggtgaccgtcgtcggtaaccattgactcttaatcacctaaatctatagctctcagaacttcaccaccggattgtctccgatgtgactttcctgtcataaaccatagacgcgaggtgatttcggtcEcoRVColA ori2,9803,0003,0203,0403,0603,0803,1003,1203,140
ttaccaggttaagcagttccccaactgacttaaccttcgatcaaaccgcctccccaggcggttttttcgtttacagagcaggagattacgacgatcgtaaaaggatctcaagaagatcctttacggattcccgacaccatcactctagatttcagtgcaatttatctcttcaaataatggtccaattcgtcaaggggttgactgaattggaagctagtttggcggaggggtccgccaaaaaagcaaatgtctcgtcctctaatgctgctagcattttcctagagttcttctaggaaatgcctaagggctgtggtagtgagatctaaagtcacgttaaatagagaagtttaBarIPvuIXbaIColA ori3,1603,1803,2003,2203,2403,2603,2803,3003,320
gtagcacctgaagtcagccccatacgatataagttgtaattctcatgttagtcatgccccgcgcccaccggaaggagctgactgggttgaaggctctcaagggcatcggtcgagatcccggtgcctaatgagtgagctaacttacattaattgcgttgcgctcactgcccgctttcatcgtggacttcagtcggggtatgctatattcaacattaagagtacaatcagtacggggcgcgggtggccttcctcgactgacccaacttccgagagttcccgtagccagctctagggccacggattactcactcgattgaatgtaattaacgcaacgcgagtgacgggcgaaaAcuIlacI3,3403,3603,3803,4003,4203,4403,4603,4803,500
ccagtcgggaaacctgtcgtgccagctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgccagggtggtttttcttttcaccagtgagacgggcaacagctgattgcccttcaccgcctggccctgagagagttgcagcaagcggtccacgctggtggtcagccctttggacagcacggtcgacgtaattacttagccggttgcgcgcccctctccgccaaacgcataacccgcggtcccaccaaaaagaaaagtggtcactctgcccgttgtcgactaacgggaagtggcggaccgggactctctcaacgtcgttcgccaggtgcgaccaBsmBIEsp3IPvuIIPvuIIlacI3,5203,5403,5603,5803,6003,6203,6403,660
ttgccccagcaggcgaaaatcctgtttgatggtggttaacggcgggatataacatgagctgtcttcggtatcgtcgtatcccactaccgagatgtccgcaccaacgcgcagcccggactcggtaatggcgcgcattgcgcccagcgccatctgatcgttggcaaccagcatcgcaaacggggtcgtccgcttttaggacaaactaccaccaattgccgccctatattgtactcgacagaagccatagcagcatagggtgatggctctacaggcgtggttgcgcgtcgggcctgagccattaccgcgcgtaacgcgggtcgcggtagactagcaaccgttggtcgtagcgtBbsIHpaIBsrDIBssHIIlacI3,6803,7003,7203,7403,7603,7803,8003,8203,840
gtgggaacgatgccctcattcagcatttgcatggtttgttgaaaaccggacatggcactccagtcgccttcccgttccgctatcggctgaatttgattgcgagtgagatatttatgccagccagccagacgcagacgcgccgagacagaacttaatgggcccgctaacagcgcgacacccttgctacgggagtaagtcgtaaacgtaccaaacaacttttggcctgtaccgtgaggtcagcggaagggcaaggcgatagccgacttaaactaacgctcactctataaatacggtcggtcggtctgcgtctgcgcggctctgtcttgaattacccgggcgattgtcgcgctApaIBcgIPspOMINmeAIIIlacI3,8603,8803,9003,9203,9403,9603,9804,0004,020
tttgctggtgacccaatgcgaccagatgctccacgcccagtcgcgtaccgtcttcatgggagaaaataatactgttgatgggtgtctggtcagagacatcaagaaataacgccggaacattagtgcaggcagcttccacagcaatggcatcctggtcatccagcggatagttaataaacgaccactgggttacgctggtctacgaggtgcgggtcagcgcatggcagaagtaccctcttttattatgacaactacccacagaccagtctctgtagttctttattgcggccttgtaatcacgtccgtcgaaggtgtcgttaccgtaggaccagtaggtcgcctatcaattaBbsIBsgIBsrDIBstEIIlacI4,0404,0604,0804,1004,1204,1404,1604,1804,200
gatcagcccactgacgcgttgcgcgagaagattgtgcaccgccgctttacaggcttcgacgccgcttcgttctaccatcgacaccaccacgctggcacccagttgatcggcgcgagatttaatcgccgcgacaatttgcgacggcgcgtgcagggccagactggaggtggcaacgctagtcgggtgactgcgcaacgcgctcttctaacacgtggcggcgaaatgtccgaagctgcggcgaagcaagatggtagctgtggtggtgcgaccgtgggtcaactagccgcgctctaaattagcggcgctgttaaacgctgccgcgcacgtcccggtctgacctccaccgttgcBclIBsgIMluIApaLIAflIIIBsiHKAIlacI4,2204,2404,2604,2804,3004,3204,3404,360
ccaatcagcaacgactgtttgcccgccagttgttgtgccacgcggttgggaatgtaattcagctccgccatcgccgcttccactttttcccgcgttttcgcagaaacgtggctggcctggttcaccacgcgggaaacggtctgataagagacaccggcatactctgcgacatcgtggttagtcgttgctgacaaacgggcggtcaacaacacggtgcgccaacccttacattaagtcgaggcggtagcggcgaaggtgaaaaagggcgcaaaagcgtctttgcaccgaccggaccaagtggtgcgccctttgccagactattctctgtggccgtatgagacgctgtagcaBstAPIlacI4,3804,4004,4204,4404,4604,4804,5004,5204,540
ataacgttactggtttcacattcaccaccctgaattgactctcttccgggcgctatcatgccataccgcgaaaggttttgcgccattcgatggtgtccgggatctcgacgctctcccttatgcgactcctgcattaggaaattaatacgactcactatatattgcaatgaccaaagtgtaagtggtgggacttaactgagagaaggcccgcgatagtacggtatggcgctttccaaaacgcggtaagctaccacaggccctagagctgcgagagggaatacgctgaggacgtaatcctttaattatgctgagtgatatAclIPfoIlacIT7 Promoter4,5604,5804,6004,6204,6404,6604,6804,700
  • Plasmid
Editing disabled on read-only sequence.
4709 bp350037504000425045002505007501000MCS-2 ORFlacIWspRlacO,RBS-1,His-Tag,ZFH066,T7 promoter,lacO,NcoI,NmeAIII,BamHI,EcoRI,Eco53kI,+15RBS,BarI,NdeI,BclIMscI,PfoI,SgrDI,SacIIBspQI,SapI,BspQI,SapI,MreI,SgrAIBamHI,StuI,BglIBstAPIBsaIMreI,SgrAI,EcoO109I,BseRIif C here, this is G249A,NcoI,BseRISrfIBsmBI,Esp3IPvuIIHpaI,BbsIBssHII,BsrDIBcgIPspOMI,ApaI,NmeAIII,BstEIIBbsIBsgI,BsrDI,BclI,AflIII,MluI,ApaLI,BsiHKAIBsgIT7 Promoter,BstAPI,AclI,PfoI

Welcome to Benchling!

Sign in to view data.

New digest

Saved digests

Enzyme AatII
Enzyme lists
Cut sites visible on maps
Find enzyme
Name Cuts
Selected Color
Show enzymes that cut

Primers

History

Lineage

 Show Full History
Change User Timestamp

Sequence Alignments

Saved Alignments

Sequence Info

Tags

Name
Parent Version
Folder
Topology
Start Index
Locked
Created
--
Length
--
Export Data
Split Workspace
Bases
4709